Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30665
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   1.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   1.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   1.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   1.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   1.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   1.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   1.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   1.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.3  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   2.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.3  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.2  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.2  

>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 43  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSV 213
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W + V
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRV 207


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 43  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSV 213
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W + V
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRV 207


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 43  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSV 213
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W + V
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRV 207


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 43  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSV 213
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W + V
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRV 207


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 43  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSV 213
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W + V
Sbjct: 106 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRV 163


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 43  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSV 213
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W + V
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRV 207


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 43  STRKISKPSTS-ASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSV 213
           ST    KP+TS AS+   SPA   +S+  +   G +++++ +  +      + W + V
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRV 207


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 43  STRKISKPSTSASKESCSPAK*CTSSCGSID-PGYDSSSTSAALAIRADGCHGWWRSV 213
           ST    KP+TS + ++ S     TSS  S +  G +++++ ++ +      + W + V
Sbjct: 150 STSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYPWMKRV 207


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 247 EHYQPHDPQPILHYATSRGSHL 182
           +H+QPH  Q  + Y   +G+++
Sbjct: 177 QHHQPHHQQQHMMYGGQQGANM 198


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 187 GCHGWWRSVGSAVGHVAGSALTGCLVVVEAANQPSNSKQLLQL 315
           G  G+W +  S   H A   + GC       +QPS ++ +  L
Sbjct: 32  GGGGFWLAAASGAPHPAALPIEGCNETGFINSQPSMAEFMTAL 74


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 247 EHYQPHDPQPILHYATSRGSHL 182
           +H+QPH  Q  + Y   +G+++
Sbjct: 179 QHHQPHHQQQHMMYGGQQGANM 200


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 187 GCHGWWRSVGSAVGHVAGSALTGCLVVVEAANQPSNSKQLLQL 315
           G  G+W +  S   H A   + GC       +QPS ++ +  L
Sbjct: 32  GGGGFWLAAASGAPHPAALPIEGCNETGFINSQPSMAEFMTAL 74


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 553 QRCAYTFNSWKVYFDYQTSTSEQFEAPAQVVIIFSV 660
           ++  +TF SWKV +   TS    F A       F +
Sbjct: 51  EKLHFTFKSWKVLYTSLTSFGYLFCASLSFYKAFKI 86


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +1

Query: 130  IDPGYDSSSTSAAL---AIRADGCHGWWRSVGSAVGHVA 237
            +D GYD  + S  L   A+     HG W  +    GHVA
Sbjct: 1994 VDAGYDVPTLSKYLDWIAVMCYDYHGQWDKI---TGHVA 2029


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 280  NQPSNSKQLLQLKPTTNTRDSRLKDH 357
            N P ++ Q+     TTN+   +LK H
Sbjct: 1394 NAPPHAPQIALTSTTTNSLTFKLKPH 1419



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 199 WWRSVGSAVGHVAG 240
           W RS G+AVG V G
Sbjct: 57  WVRSDGTAVGDVPG 70


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 271 PPPLNILLEHYQPHDPQP 218
           PPP  +   HY  + P P
Sbjct: 163 PPPPPVYTHHYARYHPYP 180


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 502 FCWKMIVLIKKSLIVLFQ 555
           +C  +I LIK  +IV+F+
Sbjct: 247 YCTTLIGLIKNCVIVIFE 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,749
Number of Sequences: 336
Number of extensions: 2890
Number of successful extensions: 21
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)