Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30665
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   1.1  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.1  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    28   1.5  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    27   1.9  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.4  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   5.9  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   7.8  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 30/137 (21%), Positives = 65/137 (47%)
 Frame = +1

Query: 58  SKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSVGSAVGHVA 237
           S  ST++S  S SP+   +S+  +  P   SSS+S++ +  +        S  S+    +
Sbjct: 131 SVSSTTSSSSSSSPSS--SSTTTTTSPSSSSSSSSSSSSSSSSS------SSSSSSSSSS 182

Query: 238 GSALTGCLVVVEAANQPSNSKQLLQLKPTTNTRDSRLKDHARGRSSNSWNVLNNSTTCHS 417
            S+ +       +++  S+S     +  T++T  S     +   SS+S +  ++S++  +
Sbjct: 183 SSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFIT 242

Query: 418 VMASMKFYVNAKSITTS 468
            M+S  F ++  ++T S
Sbjct: 243 TMSSSTF-ISTVTVTPS 258



 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 40  ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 168
           +ST   + PS+S+S  S S +   +SS  S      SSS+S++
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/85 (22%), Positives = 39/85 (45%)
 Frame = +1

Query: 43  STRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSVGSA 222
           S+   S PS+S++  + SP+   +SS  S      SSS+S++ +  +        S  S+
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196

Query: 223 VGHVAGSALTGCLVVVEAANQPSNS 297
               + S+ +   +    ++  S+S
Sbjct: 197 SSSSSSSSSSSVPITSSTSSSHSSS 221


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 29/142 (20%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
 Frame = +1

Query: 46  TRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSVGSAV 225
           T   S PS+S+S  S SP+   + S  S      SSS+S + +  +        S  S+ 
Sbjct: 148 TSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSK 207

Query: 226 GHVAGSALTGCLVVVEAANQPSNSKQLLQLKPTTNTRDSRLKDHARGRSSNSWNVLNNST 405
              + S+        +++++ S+S  +    P +++    +  +A+  S++  +  +++T
Sbjct: 208 SSASPSS-------SKSSSKFSSSSFITSTTPASSSSSGAIVSNAKTASTDDSSSASSAT 260

Query: 406 -TCHSVMASMKFYVNAKSITTS 468
            +  SV++S    ++A + + S
Sbjct: 261 SSVSSVVSSASSALSASASSAS 282



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 40  ASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAA 168
           +S+   S PS+S+SK S S     +SS  S      SSS+ ++
Sbjct: 157 SSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSS 199


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 211 VGSAVGHVAGSALTGCLVVVEAANQPSNS 297
           +GSA+GH  GS +TG      + N P+++
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADT 98


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 498 LILLENDCFNKKIIDSFISEMCLYI*FLES 587
           L+ +E  C N+KIID  I++MC +  + +S
Sbjct: 111 LMFVEVVCTNQKIIDENITDMCQHSPYFKS 140


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 548 YFRDVPIHLILGKFILITKHPLLSNLRHLPK*LLFLV 658
           +F +   HL L K   ITK  + SN + +P  +L ++
Sbjct: 548 FFAEATCHLFLEKLPTITKTYVYSNCKEIPDHILEMI 584


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 547 LFQRCAYTF--NSWKVYFDYQTSTSEQFEAPAQVVIIFSVN 663
           L   C + F  N  + +++++TST  Q E P  V  I +++
Sbjct: 651 LIPNCGHAFCSNCMEPFYEHKTSTCPQCETPFSVSDILTIH 691


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 70  TSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADG 189
           T+    S SP+   TS  GS++      S+SA  AI+++G
Sbjct: 370 TNGGGPSDSPSSSSTSVRGSVNDSNSPISSSATFAIQSNG 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,725
Number of Sequences: 5004
Number of extensions: 47217
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)