Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30665
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0340 + 2534998-2535660                                           32   0.49 
08_02_0829 - 21604845-21605588                                         29   3.5  
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152...    29   4.6  
02_03_0159 + 15822965-15823284,15823314-15823946,15824016-158241...    28   6.0  
09_04_0125 - 14866215-14866339,14866878-14866953,14867486-148675...    28   8.0  
02_02_0348 - 9233032-9233154,9233233-9233311,9233387-9233511,923...    28   8.0  

>11_01_0340 + 2534998-2535660
          Length = 220

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 5/142 (3%)
 Frame = +1

Query: 61  KPSTSASKESCSPAK*C-TSSCGSIDPGY--DSSSTSAALAIRADGCHGWWRSVGSAVGH 231
           KP++S+S  S S       ++C   +PG    SSS+S     RAD C  W      A   
Sbjct: 57  KPTSSSSSSSSSTGSASRAAACERKEPGSPASSSSSSGGKPGRADSCERW--DTNKAKNQ 114

Query: 232 VAGSALTGCLVVVEAANQPSNSK-QLLQLKPTTNTRDSRLKDHARG-RSSNSWNVLNNST 405
           +  S       +  A++  +N++  + ++K T    +S  +  +RG  S+  W++     
Sbjct: 115 IISSGR-----LTPASSSSTNARWDMNKVKNTAPPSNSNKRPVSRGSASAERWDISKKHR 169

Query: 406 TCHSVMASMKFYVNAKSITTSK 471
           +  +  A++    + K  T +K
Sbjct: 170 SQDAAAAALGSASDRKLTTVAK 191


>08_02_0829 - 21604845-21605588
          Length = 247

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 136 PGYD---SSSTSAALAIRADGCHGWWRSVGSAVGHVAGSALT 252
           PGY    SSS+S+ +  RAD C  W  +     G  A S+ T
Sbjct: 71  PGYSVASSSSSSSEIPCRADACERWDANKNKKAGGSAASSST 112


>02_04_0532 +
           23711530-23711755,23712984-23713093,23713204-23715298,
           23716092-23716153,23716236-23716277,23716614-23716673,
           23716873-23717010,23717333-23717374,23717452-23717574
          Length = 965

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 363 WEIKQFLECAQQQHDLSL-CDGFNEVLR 443
           W +KQFL+C  Q+H  +L  DG N + R
Sbjct: 408 WILKQFLDCMYQKHPRALITDGDNAMRR 435


>02_03_0159 +
           15822965-15823284,15823314-15823946,15824016-15824161,
           15824354-15824875,15825169-15825275
          Length = 575

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 363 WEIKQFLECAQQQHDLSL-CDGFNEVLR 443
           W +KQFL+C  Q+H   L  DG N + R
Sbjct: 279 WILKQFLDCMGQKHPRGLITDGDNSMRR 306


>09_04_0125 -
           14866215-14866339,14866878-14866953,14867486-14867599,
           14869849-14870010,14870358-14870486,14870618-14870704,
           14871419-14871454
          Length = 242

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 247 LTGCLVVVEAANQPSNSKQLLQLKPTTNTR 336
           + GC   VEA  +PS S++ LQ+ P  ++R
Sbjct: 177 VAGCGFQVEAVQEPSKSRKHLQIIPDLDSR 206


>02_02_0348 -
           9233032-9233154,9233233-9233311,9233387-9233511,
           9233597-9233734,9233802-9233993,9235269-9237209
          Length = 865

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 363 WEIKQFLECAQQQHDLSL-CDGFNEVLR 443
           W +KQFL+C  Q+H   L  DG N + R
Sbjct: 273 WILKQFLDCMYQKHPRGLITDGDNAMHR 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,660,497
Number of Sequences: 37544
Number of extensions: 329036
Number of successful extensions: 911
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)