Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30665
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)                    32   0.38 
SB_27078| Best HMM Match : Kazal_2 (HMM E-Value=7.6e-07)               31   0.66 
SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)                  29   4.7  
SB_17295| Best HMM Match : Cu2_monooxygen (HMM E-Value=0.00028)        29   4.7  
SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)                   29   4.7  
SB_46897| Best HMM Match : zf-CCHC (HMM E-Value=0.12)                  28   6.2  
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  28   8.1  

>SB_23667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 25/43 (58%), Positives = 33/43 (76%)
 Frame = +3

Query: 333 QGQPAQGPCAWEIKQFLECAQQQHDLSLCDGFNEVLRQCKVNN 461
           QGQ  Q PC +E++QF+ECAQ   D+++C GFNE LRQCK+ N
Sbjct: 108 QGQQ-QNPCQYELQQFVECAQNNSDMNMCQGFNEALRQCKLYN 149



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +1

Query: 61  KPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGCHGWWRSVGSAVGHVAG 240
           KPS  A++++ S A   +S      PG      S A  +          ++GS VGHV G
Sbjct: 23  KPSVPATRQASSVAPQPSSQMQPKQPGLFGQMASTAAGV----------AIGSTVGHVIG 72

Query: 241 SALTG 255
            AL G
Sbjct: 73  GALVG 77


>SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)
          Length = 245

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 508 WKMIVLIKKSLIVLFQRCAYTFNSWKVYFDYQTSTSEQFEAPAQVVIIFSVNG 666
           W + V + K+ I++F  CA + N+++  F+YQ +  +   +   + I+FS  G
Sbjct: 44  WNLTVYLDKTKIMVFNNCAKSMNNYR--FNYQGNLLKNVTSYKYLGIVFSAIG 94


>SB_27078| Best HMM Match : Kazal_2 (HMM E-Value=7.6e-07)
          Length = 54

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 681 EKQNFPIY-TKNNNYLGRCLKLLRSGCLVIKINFPRIKCIGT 559
           EK+ FP+  T  N+Y  RC KL    C+  K+   ++KC G+
Sbjct: 8   EKEAFPVCGTDGNDYPSRC-KLRYQACMQNKLGLLKVKCGGS 48


>SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)
          Length = 494

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 247 LTGCLVVVEAANQPSNSKQLLQLKPTTNTRDSRLKDHARGRSSNSWNVLNNSTTCHSVMA 426
           ++GC +V  + N   N KQLL L PT        K+H +   +NS  ++   ++   +  
Sbjct: 315 VSGC-IVNNSPNVKGN-KQLLHLPPTKTAPTELAKEHVKENLNNSSTLMRKQSSKIYIHG 372

Query: 427 SMKFY 441
            + F+
Sbjct: 373 MLGFF 377


>SB_17295| Best HMM Match : Cu2_monooxygen (HMM E-Value=0.00028)
          Length = 616

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 277 ANQPSNSKQLLQLKPTTNTRDSRLKDHARGRSSNSWNVL--NNSTTCHSVMASMKFYVNA 450
           +N PS+++  L ++ TTN+ +        G SS S N++  N S   H V  +  F V  
Sbjct: 337 SNSPSSNRNSLYIRNTTNSNNIDNLTRQMGSSSESNNLVAQNRSPFPHPVKKAPNFSVIE 396

Query: 451 KSI 459
           K +
Sbjct: 397 KIV 399


>SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)
          Length = 335

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 399 QHDLSLCDGFNEVLRQCKVNNH 464
           QHD   C  +N + R+CK  +H
Sbjct: 293 QHDRGNCPAYNAICRRCKAKHH 314


>SB_46897| Best HMM Match : zf-CCHC (HMM E-Value=0.12)
          Length = 303

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 333 QGQPAQGP--CAWEIKQFLECAQQQHDLSLCDGFNEVLRQCKVNNH 464
           + QP  GP   A    + + C +Q+HD  LC   N+   +C    H
Sbjct: 213 KSQPKGGPQGSAQGKSKCMFCGKQKHDHQLCPAKNDTCHKCNKRVH 258


>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 333 QGQPAQGP--CAWEIKQFLECAQQQHDLSLCDGFNEVLRQCKVNNH 464
           + QP  GP   A    + + C +Q+HD  LC   N+   +C    H
Sbjct: 195 KSQPKGGPQGSAQGKSKCMFCGKQKHDHQLCPAKNDTCHKCNKRVH 240


>SB_5252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 34  NHASTRKISKPSTSASKESCSPAK*CTSSCGSIDPGYDSSSTSAALAIRADGC 192
           NHA  +++ +    +SK++C PAK       +  P Y  SST     I  +GC
Sbjct: 233 NHA-LKELWRYLCRSSKKTCDPAKPAKIPFRNTTPSYLLSSTRQQAGIVNEGC 284


>SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 319 PTTNTRDSRLKDHARGRSSNSWNVL 393
           P  +T D  LKD A+GR +NS N L
Sbjct: 748 PYIHTPDDSLKDTAKGRENNSINSL 772


>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 46  TRKISKPSTSASKESCSPAK*CTSSC 123
           TR+  +P   +S E  +PA  CTSSC
Sbjct: 715 TRRRHRPIEGSSSEPDTPASSCTSSC 740


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,626,973
Number of Sequences: 59808
Number of extensions: 355517
Number of successful extensions: 989
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)