Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30665
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13030.1 68414.m01511 sphere organelles protein-related conta...    29   3.8  
At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein si...    28   5.0  
At4g11950.1 68417.m01901 hypothetical protein                          28   6.7  
At5g66960.1 68418.m08442 prolyl oligopeptidase family protein si...    27   8.8  

>At1g13030.1 68414.m01511 sphere organelles protein-related contains
           weak similarity to Swiss-Prot:Q09003 sphere organelles
           protein SPH-1 (Sphere protein 1) [Xenopus laevis]
          Length = 608

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 61  KPSTSASKESCSPAK*CTSSCGSIDPGYD-SSSTSAALAIRADGCHGWWRSVGSAVGHVA 237
           KP  SA+KE  +PAK      G + P  + S + SA  A  +   +GW +   S+ G  +
Sbjct: 531 KPKLSANKELQTPAK----ENGEVSPWEELSEALSAKKAALSQANNGWNKKGSSSGGSWS 586

Query: 238 GSALTG 255
             AL G
Sbjct: 587 YKALRG 592


>At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein
           similar to acetylornithine deacetylase
           (Acetylornithinase, AO; N-acetylornithinase, NAO)
           [Dictyostelium discoideum] SWISS-PROT:P54638
          Length = 440

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 124 GSIDPGYDSSSTSAALAIRADGCHGWWRSVGSAVGHVAGSALTGCLVVV 270
           G +   +D +S   A  + + G H   ++    VGHV   ++TG L ++
Sbjct: 342 GRLTLSFDEASAGVACNLDSPGFHVLCKATEEVVGHVKPYSITGTLPLI 390


>At4g11950.1 68417.m01901 hypothetical protein
          Length = 327

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 154 STSAALAIRADGCHGWWR-SVGSAVGHVAGSALTGCLVV 267
           S+S AL     G    W+ +VGS +G + G+ L G LVV
Sbjct: 235 SSSPALTDGGGGKLSRWKVAVGSVIGSIIGAFLLGLLVV 273


>At5g66960.1 68418.m08442 prolyl oligopeptidase family protein
           similar to OpdB [Treponema denticola] GI:13786054;
           contains Pfam profiles PF00326: prolyl oligopeptidase
           family, PF02897: Prolyl oligopeptidase, N-terminal
           beta-propeller domain
          Length = 792

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 669 FPIYTKNNNYLGRCLKLLRSGCLVIKINFPRIKCI 565
           + +Y K+N+Y   C++ L SG L  K +  R+  I
Sbjct: 200 YTMYDKDNDYFKLCVRNLNSGALCSKPHADRVSNI 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,188,911
Number of Sequences: 28952
Number of extensions: 256150
Number of successful extensions: 677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)