Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30662
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0260 - 21761145-21762416                                         28   6.5  
06_01_0144 + 1089090-1091390                                           28   8.6  

>11_06_0260 - 21761145-21762416
          Length = 423

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +2

Query: 71  YDREIDSARYKQIPKIHDYVLNEEYLASQKNRAKLITRIRPDEPVVADNVILESNVVKIV 250
           Y  + D  +  +I  + DYVL   + +S    AK    +RP    +AD+   E  + K  
Sbjct: 324 YKVDFDDQKLDKIDSLKDYVLFLGFNSSICLSAKEFPNLRPGCAYLADDSYEEIGINKHT 383

Query: 251 RPRRGKWNATS 283
               G WN  S
Sbjct: 384 LREVGIWNFKS 394


>06_01_0144 + 1089090-1091390
          Length = 766

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +2

Query: 74  DREIDSARYKQIPKIHDYVLNEE---YLASQKNRAKLITRIRPDEPVVADNVILESNVV 241
           DRE     YK + K     L      YL+S+++R + I  +R D    AD  +LE   V
Sbjct: 626 DREGTERIYKDLKKGIKAALGGARGYYLSSERSRHETIRALRVDASAAADMTVLERGAV 684


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,228,818
Number of Sequences: 37544
Number of extensions: 337923
Number of successful extensions: 704
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)