Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30662
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    29   2.9  
SB_23787| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              29   5.0  
SB_11942| Best HMM Match : Ank (HMM E-Value=3.6e-22)                   29   5.0  
SB_43289| Best HMM Match : DUF196 (HMM E-Value=5.5)                    28   6.7  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1644

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +2

Query: 56   GDRIGYDREIDSARYKQIPKIHDYVLNEEYLASQKNRAKLITR-----IRPDEPVVADNV 220
            G+ +GY+ +  S R +  P  + Y +  E +  +++ A L+TR     I  D  V+AD +
Sbjct: 1270 GEYVGYEMDDPSLRDEDGPPTYIYAIVVEEITGEESTALLLTRKYKINIGDDREVIADGI 1329

Query: 221  IL 226
             L
Sbjct: 1330 DL 1331


>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 238 HVRFQNNIICHYRFVGSYSGDEFGPVLL 155
           HV+  N +IC YR++     DE   +LL
Sbjct: 93  HVQMHNKLICRYRYLQKSYEDEMNKILL 120


>SB_23787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 115 NSRLRSKRRVFGVTEEQGQTHHQNKTRRTCSGR*CYFGIERGQ 243
           N+R R++ R F  T    Q H    T+ T  G  C FG   G+
Sbjct: 18  NTRTRTQTRKFTYTHPDTQMHKHPDTQITAVGTVCVFGCVGGR 60


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 103  TNPENSRLRSKRRVFGVTE--EQGQTHHQNKTRRTCSGR*CYFGIERGQDSETSKR*VER 276
            T PENS+ RSKR++FG          +          GR     + + +DSE  KR VE 
Sbjct: 2244 TQPENSKERSKRQMFGTVPLLSPLAPNSMEVKLEAAKGR---SSVPKREDSEKPKRSVEE 2300

Query: 277  DIGTALVR 300
                A+ R
Sbjct: 2301 QKPKAVKR 2308


>SB_11942| Best HMM Match : Ank (HMM E-Value=3.6e-22)
          Length = 540

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 152 SQKNRAKLITRIRPDEPVVADNVILESNVVKIVRPRRGKWNATSV 286
           +Q+ R K    + PD+P + D+V+L S +  +   ++  WNA  V
Sbjct: 199 TQRRRRK--QSVAPDKPDIDDDVLLASAIGDVTWLQQSLWNAKKV 241


>SB_43289| Best HMM Match : DUF196 (HMM E-Value=5.5)
          Length = 240

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +2

Query: 56  GDRIGYDREIDSARYKQIPKIHDYVLNEEYLASQKNRAKLITR-----IRPDEPVVADNV 220
           G+ +GY+ +  S R +  P  + Y +  E +  +++ A  +TR     I  D  V+AD +
Sbjct: 96  GEYVGYEMDDPSLRDEDGPPTYIYAIVVEEIPGEESTALFLTRKYKINIGDDREVIADGI 155

Query: 221 IL 226
            L
Sbjct: 156 DL 157


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +2

Query: 56   GDRIGYDREIDSARYKQIPKIHDYVLNEEYLASQKNRAKLITR-----IRPDEPVVADNV 220
            G+ +GY+ +  S R +  P  + Y +  E +  +++ A  +TR     I  D  V+AD +
Sbjct: 3924 GEYVGYEMDDPSLRDEDGPPTYIYAIVVEEIPGEESTALFLTRKYKINIGDDREVIADGI 3983

Query: 221  IL 226
             L
Sbjct: 3984 DL 3985


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,180,763
Number of Sequences: 59808
Number of extensions: 396618
Number of successful extensions: 891
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)