Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30662
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical ...    29   4.4  

>AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical
           protein F52F10.1 protein.
          Length = 99

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/86 (23%), Positives = 41/86 (47%)
 Frame = -2

Query: 426 WPSRLNTTLLLAPMTFAVVFRHRQIRISCWYSNVFQVVSAP*SH*CRTDVAFHLPLRGLT 247
           WPS+ N   +L   +F+ ++      +S  +  VFQ ++   SH    D + ++     +
Sbjct: 3   WPSKTNKCQILHTFSFSRIYFFNHNSVSFQFFLVFQKLTCR-SH---QDASRNIKFVKSS 58

Query: 246 ILTTFDSKITLSATTGSSGLILVMSL 169
           +   F  KI    +TG SG + ++++
Sbjct: 59  VGKFFKKKIIQKFSTGGSGFLGLLNI 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,774,694
Number of Sequences: 27780
Number of extensions: 291155
Number of successful extensions: 640
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)