Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30659
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   2.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   3.3  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   4.3  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 433 ITRCLRRFLKNSTDVFRFKRDSNLNYNLRSAIHKAVFLFMGQ-*LAIIYSIVKIASL 600
           +  CL  +  + T+   F       Y+    I   VF+FMGQ    I++ +  I SL
Sbjct: 262 VALCLTMYKLSLTEDLYFAIYEMHWYDASKQIQNEVFIFMGQLEKPIVFYVANIFSL 318


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 615 DVTGCLPDIDCTK 653
           DVTG  P +DC+K
Sbjct: 56  DVTGTPPPLDCSK 68


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 270 VHNIPPHTSYCHFQCNSHPY 211
           +H  PP   Y H     HPY
Sbjct: 160 LHYPPPPPVYTHHYARYHPY 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,324
Number of Sequences: 336
Number of extensions: 3544
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)