Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30659
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   3.5  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   6.2  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    25   8.2  

>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 403 FW*SKSTVLRITRCLRRFLKNSTDVFRFKRDSNLNYNL 516
           FW +KST  ++ + L  + KN  +  R+ R + L+Y++
Sbjct: 453 FWHAKSTFKQLDQELYEWEKNLPNRLRYSRQTLLSYHM 490


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +3

Query: 546 LHGPVISY--NL-LYRKNCFPFVLINDVTGCLPDIDC 647
           +H   + Y  NL +Y+   F  +LIND  GCL  I C
Sbjct: 657 IHASQLRYIDNLNVYKNWAFRKLLINDTEGCLVIIKC 693


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 310 KLPSNIIIIMNQICSQYSATHQLLSF 233
           KLP NI+I   + CS+YS   +L SF
Sbjct: 51  KLPPNILI-NKRTCSRYSFRDKLTSF 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,247
Number of Sequences: 5004
Number of extensions: 57891
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)