Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30659
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.94 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 412 SKSTVLRITRCLRRFLKNSTDVFRFKRDSNLNYNLRSAIHKAV-FLFMGQ*LAIIYSIVK 588
           S  TVL +T  L   ++ ST    F R +    N+R    K V +L  G+ L +  ++++
Sbjct: 297 SVETVLTVTAPLGAEIEPSTQTIDFGRPATFTCNVRGNPIKTVSWLKDGKPLGLEEAVLR 356

Query: 589 IASL 600
           I S+
Sbjct: 357 IESV 360


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 167 PLLKKSAITLSLMR*YGCELH 229
           PL+++   T+S+ R   CELH
Sbjct: 372 PLVRQPEDTMSVDRMQHCELH 392


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 167 PLLKKSAITLSLMR*YGCELH 229
           PL+++   T+S+ R   CELH
Sbjct: 372 PLVRQPEDTMSVDRMQHCELH 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,642
Number of Sequences: 438
Number of extensions: 4624
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)