Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30659
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36220.1 68417.m05153 cytochrome P450 84A1 (CYP84A1) / ferula...    29   3.1  
At4g15290.1 68417.m02341 cellulose synthase family protein simil...    28   7.1  
At2g32610.1 68415.m03981 cellulose synthase family protein simil...    27   9.4  

>At4g36220.1 68417.m05153 cytochrome P450 84A1 (CYP84A1) /
           ferulate-5-hydroxylase (FAH1) identical to Cytochrome
           P450 84A1 (Ferulate-5-hydroxylase) (SP|Q42600)
           [Arabidopsis thaliana]
          Length = 520

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 644 LYEMDFQPRHFIKNGDWKLPDGLK 715
           LY +D    H +    WKLPDG+K
Sbjct: 465 LYALDLAVAHILHCFTWKLPDGMK 488


>At4g15290.1 68417.m02341 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 757

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 219 VNYTENDNNWCVAEYCEHIWFIIIIMF 299
           ++ +ENDN W +A +CE  + ++ ++F
Sbjct: 42  LHISENDNVWLLAFFCESCFSLVWLIF 68


>At2g32610.1 68415.m03981 cellulose synthase family protein similar
           to Zea mays cellulose synthase-3 [gi:9622878], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 757

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 228 TENDNNWCVAEYCEHIWFIIIIM 296
           +E DN W VA +CE  +F++ ++
Sbjct: 45  SEYDNVWLVAFFCESCFFLVCLL 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,619,672
Number of Sequences: 28952
Number of extensions: 286929
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)