Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30658
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   132   5e-32
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   131   6e-32
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   1.5  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   1.5  
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    26   3.4  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   3.4  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  132 bits (318), Expect = 5e-32
 Identities = 61/85 (71%), Positives = 72/85 (84%)
 Frame = +1

Query: 1   GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
           GKLTGMAFRVP  +VSVVDLTV+L KP +YE IK  +K A+EGP+KG+LGYTED VVS+D
Sbjct: 226 GKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTD 285

Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
           F GD+HSSIFDA+AGI L+  FVKL
Sbjct: 286 FCGDNHSSIFDASAGIQLSPQFVKL 310



 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = +3

Query: 240 QLCEAISWYDNEYGYSSRVIDLIKYIQSKD 329
           Q  + +SWYDNE+GYS RV+DL+ Y  SKD
Sbjct: 306 QFVKLVSWYDNEWGYSHRVVDLVAYTASKD 335


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  131 bits (317), Expect = 6e-32
 Identities = 61/85 (71%), Positives = 72/85 (84%)
 Frame = +1

Query: 1   GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
           GKLTGMAFRVP  +VSVVDLTV+L KP +YE IK  +K A+EGP+KG+LGYTED VVS+D
Sbjct: 226 GKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTD 285

Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
           F GD+HSSIFDA+AGI L+  FVKL
Sbjct: 286 FCGDNHSSIFDASAGIQLSPQFVKL 310



 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +3

Query: 240 QLCEAISWYDNEYGYSSRVIDLIKYIQSKD 329
           Q  + +SWYDNE+GYS RV+DL+ Y  +KD
Sbjct: 306 QFVKLVSWYDNEWGYSRRVVDLVAYTAAKD 335


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -3

Query: 171 HNLIFSIPE---NALQRTFSCLLDLLLDGF 91
           +++I  IPE   N++Q T  C+LD +LD F
Sbjct: 174 NDMIDEIPEKLENSIQTTIDCVLDFVLDVF 203


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 277 YSLSYQLIASQSCHSKKFQRQHQRLKSVNHQ 185
           Y+LS  +IA Q+C     +R+ +R K  +HQ
Sbjct: 195 YALSIAIIALQTCMFISIRRKIKRFKKYSHQ 225


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = -2

Query: 304 RSMTLLE*PYSLSYQLIASQSCHSKKFQRQHQRLKSVNHQ*SLRT-----QLDLQYTREC 140
           RSM   E PY    + +ASQ  HSK       R KS+++     T      +D +  R C
Sbjct: 43  RSMEKKE-PYEELIRAVASQQLHSKAANAIFNRFKSISNNGQFPTPEEIRDMDFEIMRAC 101


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 320 LNVLDEINDSAGITIFIVVPTDSFTKLSFKEIPAAASKI 204
           L+ + +++ S   T++   P+DS  K S ++IP   + +
Sbjct: 214 LSFVSDVSSSTSETVYAHEPSDSLAKASKQQIPTVQNDL 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,517
Number of Sequences: 5004
Number of extensions: 36477
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)