Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30658
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 131 4e-31
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 131 4e-31
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 129 2e-30
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 126 9e-30
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 122 3e-28
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 66 2e-11
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 62 4e-10
07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456... 28 6.0
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 131 bits (316), Expect = 4e-31
Identities = 61/85 (71%), Positives = 73/85 (85%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGM+FRVP +VSVVDLTVR+ K ASY+AIK +K A+EG LKGI+GY E+ +VS+D
Sbjct: 251 GKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTD 310
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F+GDS SSIFDA AGI+LNDNFVKL
Sbjct: 311 FVGDSRSSIFDAKAGIALNDNFVKL 335
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/21 (66%), Positives = 21/21 (100%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYI 317
++WYDNE+GYS+RVIDLI+++
Sbjct: 336 VAWYDNEWGYSNRVIDLIRHM 356
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 131 bits (316), Expect = 4e-31
Identities = 63/85 (74%), Positives = 72/85 (84%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP +VSVVDLTVRL KPASY+ IK +KE +EG LKGILGY E+ +VS+D
Sbjct: 276 GKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEESEGKLKGILGYVEEDLVSTD 335
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F GD+ SSIFDA AGI+LNDNFVKL
Sbjct: 336 FQGDNRSSIFDAKAGIALNDNFVKL 360
Score = 42.7 bits (96), Expect = 2e-04
Identities = 15/21 (71%), Positives = 21/21 (100%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYI 317
+SWYDNE+GYSSRV+DLI+++
Sbjct: 361 VSWYDNEWGYSSRVVDLIRHM 381
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 129 bits (311), Expect = 2e-30
Identities = 63/85 (74%), Positives = 71/85 (83%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP +VSVVDLTVRL KPASY+ IK +KE AEG LKGILGY E+ +VS+D
Sbjct: 247 GKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEEAEGKLKGILGYVEEDLVSTD 306
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F GDS SSIFDA AGI+L+D FVKL
Sbjct: 307 FQGDSRSSIFDAKAGIALSDTFVKL 331
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/23 (69%), Positives = 22/23 (95%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYIQS 323
+SWYDNE+GYS+RVIDLI+++ S
Sbjct: 332 VSWYDNEWGYSTRVIDLIRHMHS 354
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 126 bits (305), Expect = 9e-30
Identities = 61/85 (71%), Positives = 71/85 (83%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP NVSVVDLT RL K ASYE +K +KEA+EG LKGILGYT++ VVS+D
Sbjct: 303 GKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKEASEGSLKGILGYTDEDVVSND 362
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
FIGD+ SSIFDA AGI L+ +F+KL
Sbjct: 363 FIGDTRSSIFDAKAGIGLSSSFMKL 387
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/21 (66%), Positives = 20/21 (95%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYI 317
+SWYDNE+GYS+RV+DLI ++
Sbjct: 388 VSWYDNEWGYSNRVLDLIGHM 408
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 122 bits (293), Expect = 3e-28
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP NVSVVDLT R+ K ASY+ +K +K A+EG LKGILGYT++ VVS+D
Sbjct: 362 GKLTGMAFRVPTPNVSVVDLTCRIEKSASYDDVKAAIKAASEGALKGILGYTDEDVVSND 421
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F+GD+ SSIFDA AGI L+ +F+KL
Sbjct: 422 FVGDARSSIFDAKAGIGLSSSFMKL 446
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/21 (66%), Positives = 20/21 (95%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYI 317
+SWYDNE+GYS+RV+DLI ++
Sbjct: 447 VSWYDNEWGYSNRVLDLIAHM 467
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 65.7 bits (153), Expect = 2e-11
Identities = 35/85 (41%), Positives = 49/85 (57%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKL G+A RVP NVSVVDL V++ K E + Q +++A LKGIL + +VS D
Sbjct: 292 GKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDSAANELKGILEVCDVPLVSVD 351
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F S DA+ + + D+ VK+
Sbjct: 352 FRCSDVSCTIDASLSMVMGDDMVKV 376
Score = 37.9 bits (84), Expect = 0.006
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 243 LCEAISWYDNEYGYSSRVIDLIKYIQSK 326
+ + I+WYDNE+GYS RV+DL + ++
Sbjct: 373 MVKVIAWYDNEWGYSQRVVDLADIVANQ 400
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 61.7 bits (143), Expect = 4e-10
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPA-SYEAIKQKVKEAAEGPLKGILGYTEDQVVSS 177
GKL G+A RVP NVSVVDL + K + + + ++AA GPL GIL + +VS
Sbjct: 304 GKLNGIALRVPTPNVSVVDLVINTVKTGITADDVNAAFRKAAAGPLSGILDVCDVPLVSV 363
Query: 178 DFIGDSHSSIFDAAAGISLNDNFVKL 255
DF SS DA+ + + D+ VK+
Sbjct: 364 DFRCSDVSSTIDASLTMVMGDDMVKV 389
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +3
Query: 243 LCEAISWYDNEYGYSSRVIDLIKYIQSK 326
+ + ++WYDNE+GYS RV+DL + SK
Sbjct: 386 MVKVVAWYDNEWGYSQRVVDLAHLVASK 413
>07_03_1004 +
23244479-23244648,23245104-23245276,23245535-23245638,
23245849-23246037,23246508-23248076
Length = 734
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 266 VPTDSFTKLSFKEIPAAASKIEECESPMKSEDTT*SSVYPRMPFKGPSAASL 111
+P D+F + K+ A +K+ PM T +V+ PF GP+ A +
Sbjct: 493 LPVDNFQRERVKKGDLAGAKVYVQAKPMLGATATDLAVWFFYPFNGPARAKV 544
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,928,697
Number of Sequences: 37544
Number of extensions: 206586
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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