Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30658
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             121   5e-28
SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)                     29   2.6  
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)                      29   3.5  
SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  121 bits (291), Expect = 5e-28
 Identities = 63/86 (73%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1    GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKG-ILGYTEDQVVSS 177
            GKLTGMAFRVPVA+VSVVDLT RL KPA YE IK  VK+A+E    G  LGYTEDQVVS+
Sbjct: 999  GKLTGMAFRVPVADVSVVDLTCRLKKPAKYEEIKAVVKKASESKEMGQYLGYTEDQVVST 1058

Query: 178  DFIGDSHSSIFDAAAGISLNDNFVKL 255
            DFIG+  SS+FDA AGI LND FVKL
Sbjct: 1059 DFIGERVSSVFDARAGIQLNDKFVKL 1084



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 15/24 (62%), Positives = 22/24 (91%)
 Frame = +3

Query: 255  ISWYDNEYGYSSRVIDLIKYIQSK 326
            ++WYDNEYGYS RV+DL++Y+ S+
Sbjct: 1085 VTWYDNEYGYSHRVVDLMRYMASR 1108


>SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)
          Length = 244

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 28  VPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQV 168
           V  A V+VV     +    S++A K  VK+  E PL   L YT DQ+
Sbjct: 147 VAAAAVAVVVCVGSVCSTISFQAYKTWVKQHGEEPLLPGLNYTNDQL 193


>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
          Length = 498

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -1

Query: 350 IHLIKSLIFRLNVLDEINDSAGITIFIVVPTDSFTKLSFKEI-PAAASKIEECESP 186
           IHL  +     NV   + D   +TI +V P D   KL      P    KI  C+ P
Sbjct: 253 IHLAWAAFEEKNVTILVGDDPSLTIDVVPPLDDTLKLDMGNAGPWGDIKIHPCDKP 308


>SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 250 KLSVGTTMNMVIPAESLISSSTFNLKIKLLIKCMNV 357
           KL+V T+ + V P  + +SSS+FN   ++++  M V
Sbjct: 567 KLNVNTSSSEVSPTVAELSSSSFNPSSRVVLAMMGV 602


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,171,075
Number of Sequences: 59808
Number of extensions: 248550
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)