Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30658
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical pr... 132 2e-31
X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein. 132 2e-31
X04818-1|CAA28504.1| 341|Caenorhabditis elegans glyceraldehyde-... 132 2e-31
Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical pr... 130 7e-31
X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein. 130 7e-31
X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene prod... 127 6e-30
X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene prod... 127 6e-30
U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd (glyceralde... 127 6e-30
U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd (glyceralde... 127 6e-30
AC024859-24|ABD63210.1| 483|Caenorhabditis elegans Hypothetical... 33 0.11
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,... 30 1.0
U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 28 5.4
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 28 5.4
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 28 5.4
Z71266-1|CAA95839.1| 945|Caenorhabditis elegans Hypothetical pr... 27 9.4
U29244-3|AAC71088.1| 363|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical
protein T09F3.3 protein.
Length = 341
Score = 132 bits (318), Expect = 2e-31
Identities = 65/85 (76%), Positives = 72/85 (84%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP +VSVVDLTVRL KPAS + IK+ VK AA+GP+KGIL YTEDQVVS+D
Sbjct: 232 GKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTD 291
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F+ D HSSIFDA A ISLN NFVKL
Sbjct: 292 FVSDPHSSIFDAGACISLNPNFVKL 316
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/24 (70%), Positives = 22/24 (91%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYIQSK 326
+SWYDNEYGYS+RV+DLI YI ++
Sbjct: 317 VSWYDNEYGYSNRVVDLIGYIATR 340
>X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein.
Length = 341
Score = 132 bits (318), Expect = 2e-31
Identities = 65/85 (76%), Positives = 72/85 (84%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP +VSVVDLTVRL KPAS + IK+ VK AA+GP+KGIL YTEDQVVS+D
Sbjct: 232 GKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTD 291
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F+ D HSSIFDA A ISLN NFVKL
Sbjct: 292 FVSDPHSSIFDAGACISLNPNFVKL 316
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/24 (70%), Positives = 22/24 (91%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYIQSK 326
+SWYDNEYGYS+RV+DLI YI ++
Sbjct: 317 VSWYDNEYGYSNRVVDLIGYIATR 340
>X04818-1|CAA28504.1| 341|Caenorhabditis elegans
glyceraldehyde-3-phosphate dehydrogenaseprotein.
Length = 341
Score = 132 bits (318), Expect = 2e-31
Identities = 65/85 (76%), Positives = 72/85 (84%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP +VSVVDLTVRL KPAS + IK+ VK AA+GP+KGIL YTEDQVVS+D
Sbjct: 232 GKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTD 291
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F+ D HSSIFDA A ISLN NFVKL
Sbjct: 292 FVSDPHSSIFDAGACISLNPNFVKL 316
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/24 (70%), Positives = 22/24 (91%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYIQSK 326
+SWYDNEYGYS+RV+DLI YI ++
Sbjct: 317 VSWYDNEYGYSNRVVDLIGYIATR 340
>Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical
protein F33H1.2 protein.
Length = 341
Score = 130 bits (314), Expect = 7e-31
Identities = 64/85 (75%), Positives = 71/85 (83%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP +VSVVDLTVRL KPAS + IK+ VK AA+GP+KGIL YTEDQVVS+D
Sbjct: 232 GKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTD 291
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F+ D HSSIFD A ISLN NFVKL
Sbjct: 292 FVSDPHSSIFDTGACISLNPNFVKL 316
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/24 (70%), Positives = 22/24 (91%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYIQSK 326
+SWYDNEYGYS+RV+DLI YI ++
Sbjct: 317 VSWYDNEYGYSNRVVDLIGYIATR 340
>X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein.
Length = 341
Score = 130 bits (314), Expect = 7e-31
Identities = 64/85 (75%), Positives = 71/85 (83%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP +VSVVDLTVRL KPAS + IK+ VK AA+GP+KGIL YTEDQVVS+D
Sbjct: 232 GKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTD 291
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F+ D HSSIFD A ISLN NFVKL
Sbjct: 292 FVSDPHSSIFDTGACISLNPNFVKL 316
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/24 (70%), Positives = 22/24 (91%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYIQSK 326
+SWYDNEYGYS+RV+DLI YI ++
Sbjct: 317 VSWYDNEYGYSNRVVDLIGYIATR 340
>X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene product
protein.
Length = 341
Score = 127 bits (306), Expect = 6e-30
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP +VSVVDLT RL KPAS + IK+ +K AA+GP+KGIL YTEDQVVS+D
Sbjct: 232 GKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTD 291
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F+ D++SSIFDA A ISLN +FVKL
Sbjct: 292 FVSDTNSSIFDAGASISLNPHFVKL 316
Score = 46.4 bits (105), Expect = 1e-05
Identities = 17/24 (70%), Positives = 22/24 (91%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYIQSK 326
+SWYDNE+GYS+RV+DLI YI +K
Sbjct: 317 VSWYDNEFGYSNRVVDLISYIATK 340
>X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene product
protein.
Length = 341
Score = 127 bits (306), Expect = 6e-30
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP +VSVVDLT RL KPAS + IK+ +K AA+GP+KGIL YTEDQVVS+D
Sbjct: 232 GKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTD 291
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F+ D++SSIFDA A ISLN +FVKL
Sbjct: 292 FVSDTNSSIFDAGASISLNPHFVKL 316
Score = 46.4 bits (105), Expect = 1e-05
Identities = 17/24 (70%), Positives = 22/24 (91%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYIQSK 326
+SWYDNE+GYS+RV+DLI YI +K
Sbjct: 317 VSWYDNEFGYSNRVVDLISYIATK 340
>U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 2
protein.
Length = 341
Score = 127 bits (306), Expect = 6e-30
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP +VSVVDLT RL KPAS + IK+ +K AA+GP+KGIL YTEDQVVS+D
Sbjct: 232 GKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTD 291
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F+ D++SSIFDA A ISLN +FVKL
Sbjct: 292 FVSDTNSSIFDAGASISLNPHFVKL 316
Score = 46.4 bits (105), Expect = 1e-05
Identities = 17/24 (70%), Positives = 22/24 (91%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYIQSK 326
+SWYDNE+GYS+RV+DLI YI +K
Sbjct: 317 VSWYDNEFGYSNRVVDLISYIATK 340
>U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 3
protein.
Length = 341
Score = 127 bits (306), Expect = 6e-30
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +1
Query: 1 GKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSD 180
GKLTGMAFRVP +VSVVDLT RL KPAS + IK+ +K AA+GP+KGIL YTEDQVVS+D
Sbjct: 232 GKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTD 291
Query: 181 FIGDSHSSIFDAAAGISLNDNFVKL 255
F+ D++SSIFDA A ISLN +FVKL
Sbjct: 292 FVSDTNSSIFDAGASISLNPHFVKL 316
Score = 46.4 bits (105), Expect = 1e-05
Identities = 17/24 (70%), Positives = 22/24 (91%)
Frame = +3
Query: 255 ISWYDNEYGYSSRVIDLIKYIQSK 326
+SWYDNE+GYS+RV+DLI YI +K
Sbjct: 317 VSWYDNEFGYSNRVVDLISYIATK 340
>AC024859-24|ABD63210.1| 483|Caenorhabditis elegans Hypothetical
protein Y71H2AM.3 protein.
Length = 483
Score = 33.5 bits (73), Expect = 0.11
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +1
Query: 43 VSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAA 222
V+V D +R+G P + EA+ ++ KEAA GP+ I ++ S+ G A
Sbjct: 62 VNVTDNYIRIGAPPTPEALIKREKEAANGPM-SIKKQQRERSTSTS--GSPTKKSSKKAK 118
Query: 223 GISLNDNFVKLSVGTTMNMVIPAESLISSSTFNLKIKLLIKC-MNVRIF 366
+F G T+ V S + S TF + C +NV F
Sbjct: 119 KAENRSDFKPTRFGATLRDVTIKASTLCSPTFADNSGRIFMCKVNVEPF 167
>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
class iii (c) protein1 protein.
Length = 1400
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +1
Query: 88 YEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLSVGT 267
Y Q +KE EG LK G TE++ + S + + S+I D A + L N K +
Sbjct: 717 YSKCSQYIKELEEGKLKAQPGCTEEETLESIILREL-STIRDHAGQVCLR-NLSKYNAPL 774
Query: 268 TMNMVIPAESLISSS 312
TM + S I+ S
Sbjct: 775 TMAVCGSKGSFINIS 789
>U64848-3|AAB04882.1| 323|Caenorhabditis elegans Hypothetical
protein C50E3.7 protein.
Length = 323
Score = 29.1 bits (62), Expect = 2.3
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = +1
Query: 151 YTEDQVVSSDFIGDSHSSIFDAAAG-ISLNDNFVKLSVGTTMNMVIPAESLISSSTFNLK 327
Y ++ VV+ +G+S S F + AG + L N +SV + I +L STF K
Sbjct: 61 YVKELVVA---LGNSSSQSFLSIAGLVHLAVNLFNISVQLSCVKFIDKRALFKKSTF-FK 116
Query: 328 IKLLIKC--MNVRIFFNM 375
I LLI+C +++R+F ++
Sbjct: 117 I-LLIQCFVVSLRVFLHI 133
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
T20G5.1 protein.
Length = 1681
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = -1
Query: 347 HLIKSLIFRLNVLDEINDSAGITIFIVVPTDSFTKLSFKEIPAAASKIE 201
HL L+F + +E D+A +T+ + PT+S+ + FKE+ A + +E
Sbjct: 1358 HLWSELVFLYDKYEEY-DNAALTM-MQHPTESWREQHFKEVIAKVANVE 1404
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 103 QKVKEAAEGPLKGILGYTEDQVVSSDFIG 189
QK++ E P++ +L Y ++ VSS+ IG
Sbjct: 1374 QKIETPTENPIRSLLIYMNEKSVSSEAIG 1402
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 103 QKVKEAAEGPLKGILGYTEDQVVSSDFIG 189
QK++ E P++ +L Y ++ VSS+ IG
Sbjct: 1412 QKIETPTENPIRSLLIYMNEKSVSSEAIG 1440
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 103 QKVKEAAEGPLKGILGYTEDQVVSSDFIG 189
QK++ E P++ +L Y ++ VSS+ IG
Sbjct: 1374 QKIETPTENPIRSLLIYMNEKSVSSEAIG 1402
>Z71266-1|CAA95839.1| 945|Caenorhabditis elegans Hypothetical
protein R06C7.1 protein.
Length = 945
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 4 KLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKG-ILGYTEDQVVSSD 180
KL G+ + V A S+ D + +G S K +G L I+G+ + V + +
Sbjct: 654 KLGGLNYTVSDAKKSMTDEQLIIGVGVSAPPAGTKYMMDNKGHLNPQIIGFASNAVANHE 713
Query: 181 FIGD 192
F+GD
Sbjct: 714 FVGD 717
>U29244-3|AAC71088.1| 363|Caenorhabditis elegans Hypothetical
protein ZK1248.7 protein.
Length = 363
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 4 KLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKG-ILGYTEDQVVSSD 180
KL G+ + V A S+ D + +G S K +G L I+G+ + V + +
Sbjct: 98 KLGGLNYTVSDAKKSMTDEQLIIGVGVSAPPAGTKYMMDNKGHLNPQIIGFASNAVANHE 157
Query: 181 FIGD 192
F+GD
Sbjct: 158 FVGD 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,915,935
Number of Sequences: 27780
Number of extensions: 199347
Number of successful extensions: 493
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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