Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30657
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   3.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   5.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.8  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   7.6  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
          protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 40 NSFHAVRSHKKCH 78
          NSFH +RS KK H
Sbjct: 60 NSFHFLRSLKKVH 72


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 404 CMYIFNLVIISRMPAYYYC 460
           C+Y F   +I  +  YY+C
Sbjct: 284 CIYYFYCALIILLCIYYFC 302


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 378 YMYNYSIIVFIPFHVPKPW 322
           Y +NY +IV   F+  + W
Sbjct: 76  YCFNYYVIVVTTFYKRRTW 94


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 664 SKLVPPGNRIT 632
           SKLVPP  RIT
Sbjct: 48  SKLVPPDERIT 58


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 664 SKLVPPGNRIT 632
           SKLVPP  RIT
Sbjct: 48  SKLVPPDERIT 58


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 194 FKKKKYLSIIENSIF*RNYQLRKLQL 117
           F+ K+YLSI E + F  + +L + Q+
Sbjct: 134 FRDKQYLSIAERAEFSSSLRLTEPQV 159


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,494
Number of Sequences: 336
Number of extensions: 3711
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)