Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30657
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_26726| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_1738| Best HMM Match : p450 (HMM E-Value=0)                         28   6.7  

>SB_34557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 369 NYSIIVFIPFHVPKPWPYI 313
           NYSI+   P   P+PWPYI
Sbjct: 21  NYSILKNEPLKGPEPWPYI 39


>SB_26726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 369 NYSIIVFIPFHVPKPWPYI 313
           NYSI+   P   P+PWPYI
Sbjct: 37  NYSILKNEPLKGPEPWPYI 55


>SB_1738| Best HMM Match : p450 (HMM E-Value=0)
          Length = 484

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 381 YYMYNYSIIVFIPFHVPKPWPYI 313
           Y +  YSI+   P   P PWPYI
Sbjct: 17  YGVSRYSILANEPLKGPNPWPYI 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,774,382
Number of Sequences: 59808
Number of extensions: 408333
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)