Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30657
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        23   2.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.7  

>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 278 FVH*MNKISGTLFFFTLKPNQQSPKYLVFKKKKY 177
           +VH    ISGT  F  ++P+   PK +V     Y
Sbjct: 23  YVHEGAFISGTSSFHEMRPDYLLPKDVVVVSSNY 56


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 104 LLAHKVVIFVIDNFFKKL 157
           L AHKVV+    ++F+KL
Sbjct: 47  LKAHKVVLSACSSYFQKL 64


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 685 LDPKPSDSKLVPPGN 641
           LD KP  + L+ PGN
Sbjct: 48  LDMKPDTASLINPGN 62


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 685 LDPKPSDSKLVPPGN 641
           LD KP  + L+ PGN
Sbjct: 48  LDMKPDTASLINPGN 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,339
Number of Sequences: 438
Number of extensions: 5080
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)