Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30655
         (701 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4UMP8 Cluster: MFS type sugar transporter; n=3; Ricket...    37   0.42 
UniRef50_UPI0001546002 Cluster: hypothetical protein ORF024; n=1...    35   1.7  
UniRef50_Q6KIA4 Cluster: Expressed protein; n=1; Mycoplasma mobi...    33   9.0  

>UniRef50_Q4UMP8 Cluster: MFS type sugar transporter; n=3;
           Rickettsia|Rep: MFS type sugar transporter - Rickettsia
           felis (Rickettsia azadi)
          Length = 425

 Score = 37.1 bits (82), Expect = 0.42
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 38  VFSQFLF-NLTFVRKFTFFGIHEVMNVYFDRTINTFIDLYEPVISRVFVSGRRYLCA*CE 214
           +FS FLF +   + K TF+ + ++  + +   I+ F   Y P++SR+F +  RY      
Sbjct: 313 LFSIFLFVSFALLNKGTFWSL-QIFFIIYQLFISLFFTSYMPILSRLFATKMRYTAIALI 371

Query: 215 FLNVFSSVKFKPI 253
           + + +S   F P+
Sbjct: 372 YNSAYSVASFIPV 384


>UniRef50_UPI0001546002 Cluster: hypothetical protein ORF024; n=1;
           Pseudomonas phage 73|Rep: hypothetical protein ORF024 -
           Pseudomonas phage 73
          Length = 274

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = -1

Query: 563 LTFRTP*-F*SIINNHRPHQH*DAPTKWKNIIFDPSVRIKRINNSSYTRITRVIVRNL 393
           +TFRTP  F S+++ + P+ +   P    N++FD   ++ R++NS  T+++ V  RN+
Sbjct: 123 VTFRTPSKFGSMLSGNIPNVYVQPPCN--NVLFDERCKVSRVSNSLDTQVSAVEGRNI 178


>UniRef50_Q6KIA4 Cluster: Expressed protein; n=1; Mycoplasma
           mobile|Rep: Expressed protein - Mycoplasma mobile
          Length = 309

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 29  ESGVFSQFLFNLTFVRKFTFFGIHEVMNVYFDRTINTFI 145
           E+  F Q  FN   ++KF  FGI+++    F  T N F+
Sbjct: 132 ENNQFEQIFFNEVALKKFNKFGIYKINEEMFSETRNEFL 170


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,117,096
Number of Sequences: 1657284
Number of extensions: 11382252
Number of successful extensions: 27290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27277
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)