Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30655
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.2  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.7  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 157 FIQINKSIYSPVKIDIHHFMNSEKG 83
           FI++ +  Y P++    H  NS  G
Sbjct: 26  FIELQQHGYGPLRTSYQHHFNSPAG 50


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 555 SNTLILINNQQSSATSTLGRSYQVEKY 475
           SN    +  Q +SA + L RSY  E+Y
Sbjct: 269 SNRRARLRKQITSAATPLVRSYAPERY 295


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = +1

Query: 310 IQIYANFYAIENVKKLALSPFIELYYHFKFL 402
           I ++ +   I  ++   LSP ++++Y F+ +
Sbjct: 291 IHVWTSKEKISFLRGFWLSPAVDMFYEFQII 321


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,533
Number of Sequences: 336
Number of extensions: 2950
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)