Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30655
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    28   1.5  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   6.0  
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    25   7.9  

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 270 SFPSDERTQTIPFHTNIR*LLRYR 341
           SFPS  RT+ + +HT +R +L+ R
Sbjct: 7   SFPSGSRTKAVRYHTLLRPILQQR 30


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 273 SCSNCIQIGLNFTLEKTLRNSH*AHRYRRPETKTRL 166
           +C NC+Q G+ +T E          +YR+   K  L
Sbjct: 119 TCENCLQEGVAYTFEMVALQCMYERKYRQSHEKATL 154


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 229 ENVKKLALSTQVSTAGNEDSTDYWFIQINKSIYSPVKIDIHH 104
           ENV K  L T  + A  + +  +  +Q+ K    P+   IH+
Sbjct: 658 ENVMKTNLDTNANLAKKKSTAGFVLVQLRKLADHPMLFRIHY 699


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 265 QLHTNWLKFYARENVKKLALSTQVSTAGNEDSTDYWFIQINK--SIYSPVKIDI 110
           Q+  ++   Y   ++K   +   ++TAG +    +W IQ+ K   + +P KI+I
Sbjct: 225 QIQKDYDIVYPVNDLKFHPIHQTLATAGGDGVVAFWDIQVRKRLRVLNPSKINI 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,347
Number of Sequences: 5004
Number of extensions: 52560
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)