Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30655
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0216 + 1843413-1843509,1844583-1844694,1844841-1844908,184...    29   3.6  
12_01_0009 + 69546-69703,69970-70128,70202-70241                       29   4.7  
07_03_0591 + 19792694-19792738,19794190-19794509,19795104-197951...    28   8.3  

>01_01_0216 +
           1843413-1843509,1844583-1844694,1844841-1844908,
           1845165-1845297,1845404-1845503,1845562-1845722,
           1846095-1846188,1846273-1846426,1846597-1846743,
           1846819-1846892,1846985-1847073,1847161-1847275,
           1847569-1847751
          Length = 508

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = -2

Query: 277 GKLFQLHTNWLKFYARENVKKLALSTQVSTAGNEDSTDYWFIQINKSIYSPVKIDIHHFM 98
           GKL Q  T   K Y RE V ++    + ++ G+ +    W    +K  +  V +    F+
Sbjct: 257 GKLSQAETAIKKLYGREKVAEVMYDLKAASQGSSEPDAGWLDLFSKRYWKVVSVGAAMFL 316


>12_01_0009 + 69546-69703,69970-70128,70202-70241
          Length = 118

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 192 DTCVLSASFLTFSLA*NLSQFVCSWNSFPSDERTQTI 302
           DT V+ ++F  F +A + SQ +  W+  PS++   TI
Sbjct: 82  DTLVIESAFSCFGVAGSSSQGLYGWSYVPSEKNMGTI 118


>07_03_0591 +
           19792694-19792738,19794190-19794509,19795104-19795161,
           19798000-19798056,19798373-19798440,19798454-19798543,
           19798619-19798820,19798902-19798988,19799642-19799719,
           19799815-19800040,19800260-19800483,19801988-19802014,
           19802470-19802518,19802594-19802688,19802778-19802864,
           19802973-19803100,19803198-19803294,19803563-19803788,
           19803888-19804294
          Length = 856

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -1

Query: 575 RSNTLTFRTP*F*SIINNHRPHQH*DAPTKWKNIIFDPSVRIKRINNSSYTRITRVIVRN 396
           R  T  F    F  I+ N +P     AP++    I   S R++R+NNSS   +  +  RN
Sbjct: 170 RLYTFDFPAVLFLWILLNKKPLNFKTAPSRLLREISISSSRVQRVNNSSAEFVANLNDRN 229

Query: 395 LK 390
           ++
Sbjct: 230 VE 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,492,344
Number of Sequences: 37544
Number of extensions: 280208
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)