Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30655
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_563| Best HMM Match : Ank (HMM E-Value=0)                           30   2.1  
SB_13085| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               28   6.4  
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)            28   8.4  

>SB_563| Best HMM Match : Ank (HMM E-Value=0)
          Length = 753

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 2   RDWGDLARVESGVFSQFLFNLTFVRKFTFFGIHEVMNVYFDRTINTFI 145
           R+W       S ++S ++  + F+RKF  FGI+ VM   F   +NTF+
Sbjct: 686 REWFSTVGAIS-IWSAWMSLVLFIRKFPLFGIYVVM---FTDILNTFL 729


>SB_13085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -1

Query: 533 IINNHRPHQH*DAPTKWKNIIFDPSVRIKRINNSSYTRITRVIVRNLK**YSSMNGLSAS 354
           I + H P    DAP        D  +R+ +I NS  + I++ +   +K  YS + G+   
Sbjct: 58  IKDTHGPASFQDAPQTSSQQPSDKKMRVNKIRNSG-SEISQAVTDMIKNYYSKLKGVKDP 116

Query: 353 FL 348
           +L
Sbjct: 117 YL 118


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 637 PANPLTNNRHDTAPTSDPTR 578
           P NP+TN RH    T++PTR
Sbjct: 380 PTNPVTNTRHWIEITANPTR 399


>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
          Length = 284

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 284 RTYANYPIPYKYTLTFTL--SRTLKNSH*AHSLNCI 385
           RT   Y IPY+Y + +TL    TL+ +H  ++ + +
Sbjct: 126 RTQCTYRIPYRYHIRYTLHVRHTLRTTHTTYATHTV 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,908,404
Number of Sequences: 59808
Number of extensions: 360039
Number of successful extensions: 817
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)