Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30655
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41510-2|ABP49526.1|  189|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U41510-2|ABP49526.1|  189|Caenorhabditis elegans Hypothetical
           protein ZC449.7 protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 650 SMKVTSEPVNQQQTRHSSDVRPDALRSNTLTFRTP 546
           S+     P+N   T +S DVRP +  + +  F+TP
Sbjct: 3   SLSSMLSPLNTNNTVYSDDVRPRSQETTSTNFQTP 37


>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 701 PHKPERTFLANLLSLSLSMKVTSEPVNQQQ 612
           P+K + T LAN+ +++ SM + + P + QQ
Sbjct: 220 PYKAQLTHLANIRAVTESMNIAAIPAHHQQ 249


>AF003386-7|AAB54258.2|  412|Caenorhabditis elegans Hypothetical
           protein F59E12.8 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 38  VFSQFLFNLTFVRKFTFFGIHEVMNVYFDRTINTFIDLYEPVISRVFV 181
           + S F   +   +K TFF  H    ++     + FID Y   +S + V
Sbjct: 107 LLSTFNLEIRVAKKSTFFAFHLFSTIWLLAWFHVFIDFYTSELSGMMV 154


>AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical
           protein Y54G2A.11a protein.
          Length = 482

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 695 KPERTFLANLLSLSLSMKVTSEPVNQQQTRHSSDVRPDALRSNTLTFRTP 546
           KP+R  +    + S SM+  S+P +Q  +RH S   P   R   + ++TP
Sbjct: 394 KPQRAQICGKKA-SQSMRTVSKPTDQCDSRHFSKFTP---RRKHIAYKTP 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,280,693
Number of Sequences: 27780
Number of extensions: 280092
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)