Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30654
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    29   0.51 
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    26   4.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   4.8  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   6.3  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   8.4  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   8.4  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 183 DKPEI*PETLYYKHDNIILQQSINLPDAILGSFKEASE 296
           D  E+ PE + Y +DNI     +NL D +L   KE +E
Sbjct: 485 DIDELAPEIMEYYYDNITFTPFVNLDDELLLIEKEKNE 522


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 205 SGHISGLSSILFALSIDR-PELNESQQSSQVDKVEHVIPLPTPVKSSGNLKRKPLRQVIS 29
           SGH+SGL+ I   ++ID     +E+ Q  +       I LP P+  +    + P   ++ 
Sbjct: 355 SGHLSGLAGINMLVNIDPFGSFDENAQVMRYSANAREI-LPPPLNENSG-SQSPSHSLLQ 412

Query: 28  FDKNERKTQ 2
             KN   T+
Sbjct: 413 KSKNTSSTK 421


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 230 VIMFIIQCFWSYFRLIIHSIC 168
           +I F++ CF SYF  I H  C
Sbjct: 537 LIGFVLACFGSYFMYINHGWC 557


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 693 NFGLSTIPINLEKNMFSYKDSLVPWFCRQVQICKILSSV 577
           +F  S + + +E+N F   +S  P+  RQ+ I  + S++
Sbjct: 514 SFPFSKLTVPVERNSFRETESPKPFLSRQIGISTLSSNI 552


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 213 YYKHDNIILQQSINLPDAILGSFKEASESL 302
           Y + D  IL  +++LP  IL S+KEA E+L
Sbjct: 210 YIQIDEPIL--TLDLPQEILASYKEAYETL 237


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 659 SRFMGIVDNPKLPWIPW 709
           SR  G+   PK  W+PW
Sbjct: 299 SRLAGMAWGPKTAWVPW 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,543
Number of Sequences: 5004
Number of extensions: 62930
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)