Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30654
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796...    29   2.9  
02_05_0795 - 31792231-31794780                                         29   5.0  
03_06_0100 - 31647506-31647664,31647752-31647835,31647933-316480...    28   8.7  

>12_01_1064 -
           10978039-10978190,10978731-10978865,10979217-10979605,
           10979669-10979892,10980011-10980172,10980256-10980906,
           10981583-10981804
          Length = 644

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 333 NKPCATQLCRYLNFNIYYNTTKTFTQNENYEHFV-KLFP 446
           N P A Q CR +  ++ +NTT   T  E + H   +LFP
Sbjct: 479 NSP-APQPCRIITLDVAFNTTPQITSTEPHPHLPGELFP 516


>02_05_0795 - 31792231-31794780
          Length = 849

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 159 IDNANRMDDKPEI*PETLYYKHDNIILQQSINLPDAILGSFKEASESLTRAPSS 320
           +D+  +MD   E+  E    K DNI L      PDA  G F    +  T  P S
Sbjct: 723 VDSPKKMDVNNEVKYEV---KVDNIDLDDLFRTPDAAFGGFSVLHDPSTSEPDS 773


>03_06_0100 -
           31647506-31647664,31647752-31647835,31647933-31648089,
           31648181-31648446,31648524-31648796,31648874-31648985,
           31649112-31649331,31649476-31649899
          Length = 564

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 515 VPDLFNTILSIKAIKFKFIDERVWKQFYKMLIVFIL 408
           VPD+FNT + +     ++ D     QFY  L +F L
Sbjct: 321 VPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDL 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,058,918
Number of Sequences: 37544
Number of extensions: 341078
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)