Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30654
         (729 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095047-1|AAM11375.1|  520|Drosophila melanogaster LD35592p pro...    33   0.30 
AE014134-2288|AAF53251.1|  520|Drosophila melanogaster CG5439-PA...    33   0.30 

>AY095047-1|AAM11375.1|  520|Drosophila melanogaster LD35592p
           protein.
          Length = 520

 Score = 33.5 bits (73), Expect = 0.30
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 196 ISGLSSILFALSIDRPELNESQQS--SQVDKVEHVIPLPTPVKSSGNLKR 53
           +  LS +LFAL++D  ELN  ++S  S   K E +I   +PV   G  KR
Sbjct: 193 VDSLSDVLFALNVDTTELNAPRRSTPSVAVKEEPIIFTTSPVPVVGRQKR 242


>AE014134-2288|AAF53251.1|  520|Drosophila melanogaster CG5439-PA
           protein.
          Length = 520

 Score = 33.5 bits (73), Expect = 0.30
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 196 ISGLSSILFALSIDRPELNESQQS--SQVDKVEHVIPLPTPVKSSGNLKR 53
           +  LS +LFAL++D  ELN  ++S  S   K E +I   +PV   G  KR
Sbjct: 193 VDSLSDVLFALNVDTTELNAPRRSTPSVAVKEEPIIFTTSPVPVVGRQKR 242


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,333,295
Number of Sequences: 53049
Number of extensions: 628075
Number of successful extensions: 1480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)