Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30653
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    98   1e-21
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    98   1e-21
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    26   6.1  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   6.1  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   8.1  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 60/146 (41%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
 Frame = +3

Query: 201 FLSGSNCRQISFLVFPETLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHN 380
           F    +  +  +  F + + K KK TGEIV               FGIW+RY+SRSG HN
Sbjct: 29  FAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHN 88

Query: 381 MYREYRDLSLGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAARVAVHRSNSSTTAPFR 557
           MY+E+RD +  GAV   Y DM ARHRAR  SI+I+K VEV K   V  +          +
Sbjct: 89  MYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLK 148

Query: 558 FPLPKR---VHHYKRLNTFAYKRPST 626
           FPLP R   V        FA  RPST
Sbjct: 149 FPLPHRRTGVVGLAGKKVFAPHRPST 174



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 26/69 (37%), Positives = 48/69 (69%)
 Frame = +1

Query: 127 REYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRHLRSSRRPLVKLSLLRKF 306
           +EY+V+GRK+P+E+EP P L++MR+F+P+  VAKSR+WYFL+ +   ++   ++  + + 
Sbjct: 4   KEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEI 63

Query: 307 QRKAPSRLR 333
               P + +
Sbjct: 64  SEPKPLKAK 72


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 60/146 (41%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
 Frame = +3

Query: 201 FLSGSNCRQISFLVFPETLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHN 380
           F    +  +  +  F + + K KK TGEIV               FGIW+RY+SRSG HN
Sbjct: 29  FAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHN 88

Query: 381 MYREYRDLSLGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAARVAVHRSNSSTTAPFR 557
           MY+E+RD +  GAV   Y DM ARHRAR  SI+I+K VEV K   V  +          +
Sbjct: 89  MYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLK 148

Query: 558 FPLPKR---VHHYKRLNTFAYKRPST 626
           FPLP R   V        FA  RPST
Sbjct: 149 FPLPHRRTGVVGLAGKKVFAPHRPST 174



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 26/69 (37%), Positives = 48/69 (69%)
 Frame = +1

Query: 127 REYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRHLRSSRRPLVKLSLLRKF 306
           +EY+V+GRK+P+E+EP P L++MR+F+P+  VAKSR+WYFL+ +   ++   ++  + + 
Sbjct: 4   KEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEI 63

Query: 307 QRKAPSRLR 333
               P + +
Sbjct: 64  SEPKPLKAK 72


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 491  GSNQGCACCRPQVKQFHNSTIQIPIAQTCAPLQ 589
            G  QGCA C P +  F    I+I  A+T   +Q
Sbjct: 1071 GQPQGCALCYPYILAFEPDFIEIRNAETAELVQ 1103


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 287 NFTSGLLELLKCLRKYQKRD 228
           N  SG + L++C++KY  RD
Sbjct: 105 NNISGTINLIECMKKYNVRD 124


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 127 REYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWY 243
           +E  V+   +  E     P   +R +SP+ ++  S FWY
Sbjct: 470 QEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 234 TRFGDNWIRRENSHFIQGRLGLVLRRELAADN 139
           ++F DN++  ++      R+G+ L REL  D+
Sbjct: 3   SQFNDNFVATDDDVGTMARVGMALDRELNGDS 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,964
Number of Sequences: 5004
Number of extensions: 57537
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)