Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30653
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 94 1e-19
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 93 3e-19
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 91 6e-19
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 29 2.8
01_01_1219 + 9858375-9858483,9859184-9859506 29 3.7
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834 29 4.8
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 29 4.8
01_06_0048 + 25951544-25952074 28 6.4
04_04_0243 - 23858975-23860706,23861178-23861230,23861338-238615... 28 8.5
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 93.9 bits (223), Expect = 1e-19
Identities = 47/114 (41%), Positives = 61/114 (53%)
Frame = +3
Query: 234 FLVFPETLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSLG 413
F F LKK KK+ G+I+ N+GIWLRY+SR+G HNMY+EYRD +L
Sbjct: 43 FWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLN 102
Query: 414 GAVTQCYRDMGARHRARAHSIQIIKVEVIKAARVAVHRSNSSTTAPFRFPLPKR 575
GAV Q Y +M +RHR R IQIIK + + + +FPL R
Sbjct: 103 GAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYR 156
Score = 57.6 bits (133), Expect = 9e-09
Identities = 21/68 (30%), Positives = 45/68 (66%)
Frame = +1
Query: 130 EYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRHLRSSRRPLVKLSLLRKFQ 309
+Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR L+ ++ ++ + +
Sbjct: 8 QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 310 RKAPSRLR 333
K P+ ++
Sbjct: 68 EKNPTTIK 75
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 92.7 bits (220), Expect = 3e-19
Identities = 46/114 (40%), Positives = 61/114 (53%)
Frame = +3
Query: 234 FLVFPETLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSLG 413
F F LKK KK+ G+++ N+GIWLRY+SR+G HNMY+EYRD +L
Sbjct: 43 FWYFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLN 102
Query: 414 GAVTQCYRDMGARHRARAHSIQIIKVEVIKAARVAVHRSNSSTTAPFRFPLPKR 575
GAV Q Y +M +RHR R IQIIK + + + +FPL R
Sbjct: 103 GAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYR 156
Score = 56.8 bits (131), Expect = 2e-08
Identities = 20/68 (29%), Positives = 45/68 (66%)
Frame = +1
Query: 130 EYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRHLRSSRRPLVKLSLLRKFQ 309
+Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR L+ ++ ++ + +
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
Query: 310 RKAPSRLR 333
+ P+ ++
Sbjct: 68 ERNPTTIK 75
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 91.5 bits (217), Expect = 6e-19
Identities = 45/111 (40%), Positives = 59/111 (53%)
Frame = +3
Query: 243 FPETLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSLGGAV 422
F LKK KK+ G+++ N+GIWLRY+SR+G HNMY+EYRD +L GAV
Sbjct: 63 FLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAV 122
Query: 423 TQCYRDMGARHRARAHSIQIIKVEVIKAARVAVHRSNSSTTAPFRFPLPKR 575
Q Y +M +RHR R IQIIK + + +FPL R
Sbjct: 123 EQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYR 173
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +1
Query: 130 EYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFW--YFLRHLRSSRRPLVKLSLLRK 303
+Y+V+GR LP+ + P +Y+M++++ + + AKS+F Y +R P+ + LRK
Sbjct: 8 QYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRY-FLRK 66
Query: 304 FQR 312
++
Sbjct: 67 LKK 69
>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2
Query: 352 RSQIPKFLILMGLFSGISLIETISPVVFLNFLSVSGNTRNEI 227
RS++P L GLFSG SLI T P + + + + N N+I
Sbjct: 1112 RSEVPVNL-QFGLFSGPSLIPTPVPAIQIGSIQMPINLHNQI 1152
>01_01_1219 + 9858375-9858483,9859184-9859506
Length = 143
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 136 EVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFL-RHLRSSRRPLVKLSLLRKFQR 312
E G P E +P + M + + ++ + R L + LR RR LV+ LRK R
Sbjct: 72 EEAGTDQPEEPKPTVSIETMPLETKQKMIMEQRAKMKLAKKLRQRRRRLVQKRRLRKKGR 131
Query: 313 KAPSRLRTL 339
PS+++ L
Sbjct: 132 WPPSKMKKL 140
>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
Length = 939
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 525 RSNSSTTAPFRFPLPKRVHHYKRLNTFAYKRPS 623
+ +SS T+PFR LP+R L+ F RPS
Sbjct: 720 KESSSQTSPFRLALPQRRARSPLLSFFTNGRPS 752
>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 347 PDTKVLNLDGAFLWNFLNRDNFTSGLLELLKCLRKYQKRDLATIGSGEKILILYKGGLGS 168
PD+ VL L+GA + R + LRK Q++ LA++ +L +G LGS
Sbjct: 1547 PDSCVLFLNGAICMDIAWRFAAPQFIARAASSLRKAQQKSLASLPIVSLLLAQAEGSLGS 1606
>01_06_0048 + 25951544-25952074
Length = 176
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 284 FTSGLLELLKCLRKYQKRDLATIGSGEKILILYKGGLGSFSEG 156
FT G+ + RKY D + G G L+ GG GS S+G
Sbjct: 13 FTKGIRSYWRS-RKYHSVDSSAAGRGTSNLVRLGGGSGSGSDG 54
>04_04_0243 -
23858975-23860706,23861178-23861230,23861338-23861538,
23861649-23861990,23862277-23862423,23862945-23863086,
23863876-23863959,23864772-23864779
Length = 902
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 235 FWYFLRHLRSSRRPLVKLSLLRKFQRKAPSRLRTLVSGY 351
F LRHL S+ +P L LLR+ R T+++G+
Sbjct: 491 FNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGF 529
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,085,606
Number of Sequences: 37544
Number of extensions: 401769
Number of successful extensions: 1073
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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