Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30653
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   124   5e-29
AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    28   7.6  
AL023856-1|CAA19566.1|  327|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      28   7.6  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  124 bits (300), Expect = 5e-29
 Identities = 61/131 (46%), Positives = 77/131 (58%)
 Frame = +3

Query: 234 FLVFPETLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSLG 413
           F  F   L++ KK  GEI+              N+G+WL+Y+SR+G HNMYREYRD ++ 
Sbjct: 47  FWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVA 106

Query: 414 GAVTQCYRDMGARHRARAHSIQIIKVEVIKAARVAVHRSNSSTTAPFRFPLPKRVHHYKR 593
           GAVTQCYRDMGARHRA+A  I I+KV+ +KA             A  RFPLP RV   K 
Sbjct: 107 GAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKN 166

Query: 594 LNTFAYKRPST 626
           L+ F   R +T
Sbjct: 167 LSVFTTARQNT 177



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 30/76 (39%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
 Frame = +1

Query: 109 KAKGQS-REYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRHLRSSRRPLVK 285
           KA G++  EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  LR  ++   +
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 286 LSLLRKFQRKAPSRLR 333
           +  +++   K P  ++
Sbjct: 64  ILSIKQVFEKNPGTVK 79


>AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical
           protein Y94A7B.7 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 117 FSLHFWSFYLKDLVSLV--PNSCSP 49
           F+LHFWSF L   +SL   P  CSP
Sbjct: 50  FNLHFWSFALDLTLSLFVQPYFCSP 74


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 302 FLNRDNFTSGLLELLKCLRKY 240
           +L R +FTS  L++LKCL  Y
Sbjct: 691 YLKRFSFTSAALKILKCLNHY 711


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 302 FLNRDNFTSGLLELLKCLRKY 240
           +L R +FTS  L++LKCL  Y
Sbjct: 691 YLKRFSFTSAALKILKCLNHY 711


>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 118 GQSREYEVIGRKLPSENEPK-PPLYKMRIFSPDPIVAKSRFWY 243
           G S E  ++    PS + P  PP Y+ +      IV  S FW+
Sbjct: 73  GTSEENSLLSPDSPSSSTPNFPPQYESQNLKESVIVRNSIFWF 115


>AL023856-1|CAA19566.1|  327|Caenorhabditis elegans Hypothetical
           protein Y94A7B.4 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 117 FSLHFWSFYLKDLVSLV--PNSCSP 49
           F+LHFWS  L  L+SL+  P  CSP
Sbjct: 48  FNLHFWSAALDILLSLLAQPFLCSP 72


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 302 FLNRDNFTSGLLELLKCLRKY 240
           +L R +FTS  L++LKCL  Y
Sbjct: 691 YLKRFSFTSAALKILKCLNHY 711


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,731,927
Number of Sequences: 27780
Number of extensions: 328792
Number of successful extensions: 1007
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)