Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30653
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB) 96 2e-20
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si... 96 2e-20
At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW 93 1e-19
At2g35200.1 68415.m04317 expressed protein 29 3.1
At1g06280.1 68414.m00664 LOB domain family protein / lateral org... 28 5.3
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof... 28 7.1
At5g45050.2 68418.m05524 disease resistance protein-related simi... 27 9.3
At5g45050.1 68418.m05523 disease resistance protein-related simi... 27 9.3
At5g27950.1 68418.m03366 kinesin motor protein-related kinesin h... 27 9.3
>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
Length = 178
Score = 96.3 bits (229), Expect = 2e-20
Identities = 47/111 (42%), Positives = 61/111 (54%)
Frame = +3
Query: 234 FLVFPETLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSLG 413
F F LKK KK+ G+++ NFGIWLRY+SR+G HNMY+EYRD +L
Sbjct: 43 FWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLN 102
Query: 414 GAVTQCYRDMGARHRARAHSIQIIKVEVIKAARVAVHRSNSSTTAPFRFPL 566
GAV Q Y +M +RHR R IQIIK + A + + +FPL
Sbjct: 103 GAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPL 153
Score = 61.7 bits (143), Expect = 5e-10
Identities = 22/68 (32%), Positives = 47/68 (69%)
Frame = +1
Query: 130 EYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRHLRSSRRPLVKLSLLRKFQ 309
+Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR L+ ++ ++ + +
Sbjct: 8 QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67
Query: 310 RKAPSRLR 333
K P+ ++
Sbjct: 68 EKNPTTIK 75
>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
similar to GB:CAA08791 from [Podocoryne carnea]
Length = 178
Score = 95.9 bits (228), Expect = 2e-20
Identities = 46/116 (39%), Positives = 62/116 (53%)
Frame = +3
Query: 219 CRQISFLVFPETLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYR 398
C + F F LKK KK+ G+++ N+GIWLRY+SR+G HNMY+EYR
Sbjct: 38 CAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYR 97
Query: 399 DLSLGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAARVAVHRSNSSTTAPFRFPL 566
D +L G V Q Y +M +RHR R IQIIK + A + + +FPL
Sbjct: 98 DTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPL 153
Score = 62.1 bits (144), Expect = 4e-10
Identities = 22/68 (32%), Positives = 46/68 (67%)
Frame = +1
Query: 130 EYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRHLRSSRRPLVKLSLLRKFQ 309
+Y+V+GR LP+EN+ P +Y+M+++ + + AKS+FWYF+R L+ ++ ++ + +
Sbjct: 8 QYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIF 67
Query: 310 RKAPSRLR 333
K P+ ++
Sbjct: 68 EKNPTTIK 75
>At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW
Length = 178
Score = 93.5 bits (222), Expect = 1e-19
Identities = 44/103 (42%), Positives = 59/103 (57%)
Frame = +3
Query: 258 KKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSLGGAVTQCYR 437
KK KK+ G+++ NFGIWLRY+SR+G HNMY+EYRD +L GAV Q Y
Sbjct: 51 KKVKKSNGQMLAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYT 110
Query: 438 DMGARHRARAHSIQIIKVEVIKAARVAVHRSNSSTTAPFRFPL 566
+M +RHR R IQIIK + A+ + + +FPL
Sbjct: 111 EMASRHRVRFPCIQIIKTATVPASLCKRESTKQFHNSKIKFPL 153
Score = 59.7 bits (138), Expect = 2e-09
Identities = 20/68 (29%), Positives = 47/68 (69%)
Frame = +1
Query: 130 EYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRHLRSSRRPLVKLSLLRKFQ 309
+Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR + ++ ++ + +
Sbjct: 8 QYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEIF 67
Query: 310 RKAPSRLR 333
K P+ ++
Sbjct: 68 EKNPTTIK 75
>At2g35200.1 68415.m04317 expressed protein
Length = 201
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 199 IFSPDPIVAKSRFWYFLRHLRSSRRPLVKLSLLRKFQRKAP 321
+FSP P+ +K WYF ++ R+ V + FQ+++P
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQSRVSKMI---FQQRSP 197
>At1g06280.1 68414.m00664 LOB domain family protein / lateral organ
boundaries domain family protein (LBD2) nearly identical
to SP|Q9LNB9 Putative LOB domain protein 2 {Arabidopsis
thaliana}; similar to lateral organ boundaries (LOB)
domain-containing proteins from Arabidopsis thaliana
Length = 206
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 473 NTDHQSGSNQGCACCRPQVKQFHNSTIQIP 562
N + S S+Q CA C+ Q K+ +N I P
Sbjct: 14 NISNNSSSHQACASCKHQRKKCNNECILSP 43
>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 379
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -3
Query: 141 NLIFSRLSFSLHFWSFYLKD----LVSLVPNSCSPGDPLVLERPP 19
NLI S+L S H W YL L+S P S S +P +++ PP
Sbjct: 73 NLIKSKLVGSSHGWGVYLSSPDYILISNYP-SRSKSNPKIIDLPP 116
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 295 IETISPVVFLNFLSVSGNTRNEIWR 221
IE ISPV+ L+ + VSGN E+ R
Sbjct: 1000 IENISPVLSLDPMEVSGNEDEEVLR 1024
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 295 IETISPVVFLNFLSVSGNTRNEIWR 221
IE ISPV+ L+ + VSGN E+ R
Sbjct: 1028 IENISPVLSLDPMEVSGNEDEEVLR 1052
>At5g27950.1 68418.m03366 kinesin motor protein-related kinesin
heavy chain-like protein, potato, PIR:T07397
Length = 625
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 421 SLSAIEIWELDTEPELTQYRSSKWK*SRLRVLPSTGQTVPQQHHSDSHCPNVCTTTR--D 594
S ++EI L TE E+ + ++W ++ R + ST T + S SHC T R D
Sbjct: 237 SKGSVEIEGL-TEVEVMDFTKARWWYNKGRRVRSTSWTNVNETSSRSHCLTRITIFRRGD 295
Query: 595 LIPSRT 612
+ S+T
Sbjct: 296 AVGSKT 301
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,934
Number of Sequences: 28952
Number of extensions: 313222
Number of successful extensions: 861
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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