Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30652
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    26   6.6  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   8.8  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   8.8  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 157 LNVIDNSGSPHQAPVSVKISESQIANPKWTLSAYTKVRFIKLSNLYALLAVG 2
           LN + + G+ +++ +       +  NPK      TK  +IKLSN ++ L  G
Sbjct: 8   LNCLSSDGTLNESSIYKTYQILESLNPK---DVDTKENYIKLSNTFSTLGSG 56


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 196 SSLSYCMYTKHTTLNVIDNSGSPHQAPVSVKISES 92
           +SLS         L  + N  SPH  P+SV++  S
Sbjct: 378 NSLSLEQENVFLNLEKLTNKASPHGLPISVRLGNS 412


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -3

Query: 199 TSSLSYCMYTKHTTLNVIDNSGSPHQAPVSVKISES 92
           T +L  C  T H+++N I++ G+P     +  ++++
Sbjct: 653 TDNLHACRTTTHSSVNSINSHGNPRTVDANDPVADT 688


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 435 THITDHVFDAHTHGYYLLSNFGF 367
           T ++++VFD  + G  ++ NFGF
Sbjct: 434 TQLSENVFDPTSSGELVIHNFGF 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,150
Number of Sequences: 5004
Number of extensions: 58032
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)