Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30652
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43366| Best HMM Match : CUB (HMM E-Value=3.6e-39)                   31   1.0  
SB_9362| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_39556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_59601| Best HMM Match : AT_hook (HMM E-Value=3.3)                   28   7.1  
SB_12945| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)                  28   9.4  

>SB_43366| Best HMM Match : CUB (HMM E-Value=3.6e-39)
          Length = 306

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 644 TYLSRRPEVVSFHSPFYTCRLLTSTSRLACTASY 745
           TYL+   EVV F S  Y C+ L  T+  +C A Y
Sbjct: 141 TYLTPMKEVVFFVSYGYECKYLLDTNERSCLAPY 174


>SB_9362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -1

Query: 291 EICDYRSIKYNHIVYKLTILINYSRISTTAGPLVLVIACIQNIQHLMSLTTQAPHTKRLS 112
           E+   + + Y  +  + T  ++Y  + TT GP    +  IQ + +    TTQ P  + + 
Sbjct: 298 EVRTTQGLSYREV--RTTQGLSYREVRTTQGPSYREVRTIQGLSYREVRTTQGPSYREVR 355

Query: 111 V*KSLN 94
           V K L+
Sbjct: 356 VTKGLS 361


>SB_39556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 391 VSMRV-CVKYMVSDVCVIFSLLI*FIFYALFKKILALCTSFYI 516
           V M+V C  +MV+D+C++   L+ FI  +    IL +    YI
Sbjct: 103 VPMQVACAVFMVNDLCIVTDTLVKFISVSTIIHILLITVDRYI 145


>SB_59601| Best HMM Match : AT_hook (HMM E-Value=3.3)
          Length = 370

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 725 IAKLRSITGKCRMENGRIP 669
           I +LR +   CRMENGRIP
Sbjct: 234 ITRLRWLGHVCRMENGRIP 252


>SB_12945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 725 IAKLRSITGKCRMENGRIP 669
           I +LR +   CRMENGRIP
Sbjct: 150 ITRLRWLGHVCRMENGRIP 168


>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
          Length = 978

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 743 RMQCRPIAKLRSITGKCRMENGRIP 669
           R  C    +LR +   CRMENGRIP
Sbjct: 834 RTICPISGRLRWLGHVCRMENGRIP 858


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,795,503
Number of Sequences: 59808
Number of extensions: 402521
Number of successful extensions: 1012
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)