Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30652
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z83105-8|CAB05488.1|  496|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical
           protein F25H2.1 protein.
          Length = 457

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 548 RPRNFRKKGYKVFASRINLEMLVIK 622
           +PR FRK+ YKV   RIN+  L +K
Sbjct: 240 QPRRFRKQLYKVIIFRINVSKLSLK 264


>AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical
           protein C18E3.4 protein.
          Length = 150

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -1

Query: 636 ISHESLITSISKLIREAKTLYPFLRKLRGRRSMKFSTLIENIERSAQC 493
           I+ ++LI   SKL    +TL P  R L  R+  K  T I  I    QC
Sbjct: 63  INCDNLIPKASKLYIIIQTLLPLSRNLLIRQLPKILTFISQINVDKQC 110


>Z83105-8|CAB05488.1|  496|Caenorhabditis elegans Hypothetical
           protein F14H3.8 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +3

Query: 3   PTASNAYRFDNFINRTLV*ADNVHFGLAIWDSEIFTLTGAWCGEPELSMTLSVVCFVYM 179
           PT +N + +D+    TL+  +NVH  + + +++  T+  A   +  LS T   + + ++
Sbjct: 64  PTRTNVFYYDSKGKNTLITCENVHKSVLVEENDFVTVFFAELKDILLSETSIKIIYFFI 122


>Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical
           protein R02D5.6 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 431 TSLTMYLTHTRMDTIYCQTLVFDVCCQIKNRLNIVCL 321
           T++T+YLT+  +   Y   LV D CC++ + ++ V L
Sbjct: 47  TTITLYLTNRDLRRKYILYLVLD-CCELLDAISYVLL 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,339
Number of Sequences: 27780
Number of extensions: 321599
Number of successful extensions: 736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)