Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30651
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 29 0.50
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 29 0.66
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 29 0.88
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 28 1.2
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 28 1.2
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 1.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.0
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 3.5
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 26 4.7
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 4.7
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 26 4.7
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 26 4.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 6.2
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 26 6.2
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 29.5 bits (63), Expect = 0.50
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 328 YSSHLSQYTTHCYLHISHPAD 390
Y S YTTHC +H++ P D
Sbjct: 99 YCESKSMYTTHCVIHVAVPQD 119
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 29.1 bits (62), Expect = 0.66
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = +3
Query: 282 LNLFNTINDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTA 461
L LF +N+A PDD+I P +Y+ + L LR L+ DG +I L
Sbjct: 64 LTLFAPLNEAFPDDSI--EPNLLYYIVNTTELD-----RSVLRTQLKSSDG-QQIALKIH 115
Query: 462 YKVDK-RARGINNNSDSMSLRARTNCSQLMILMCDNAWLDLFAEDLETLN 608
YK + RA NN+ + R + + ++ DN +DL LE L+
Sbjct: 116 YKAETGRAYDKVNNAQIVQSNWRADSGVVQVI--DNI-IDLPPPALEILS 162
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 445 ILSNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLKRFN 281
++SNPS++ D+ VCPP+E S++ T+ + L + T + FN
Sbjct: 419 VVSNPSTLDDDY-NYMFVCPPEEYTYSTDNVRTDSLDLQSLPTPTLEQLESVPFN 472
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 39 FYNLPSARRFYLILNQFTRKENNSYLHTIRG-HHSNHNAEVSN 164
F+ LPS +L R N+ L + G H +HNA+ N
Sbjct: 398 FHGLPSLADLPAVLESMFRPSGNNNLLNLNGIFHPDHNAQTEN 440
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 28.3 bits (60), Expect = 1.2
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = -1
Query: 574 SHALSHIK-IISCEQFVRARKLILSLLLFIPRARLSTLYAVIKFILSNPSSISKDFLRAS 398
S A +++K + CE +R IL +LL++P + ++ K + PSS+S LR
Sbjct: 732 SQADNYVKESLLCESALRR---ILRILLYLPHSDMAITLQFFKQLSMVPSSLS--LLRKV 786
Query: 397 SVCPPDERYASSNEWYTEKGEKNMLSSGTASL 302
+ P ++ EKG K + S A+L
Sbjct: 787 HIIPLLTHILGDSK--IEKGRKEIRSEALAAL 816
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = -3
Query: 260 IQAVRASGXXXXXXXXX*KHWLVTVETTNNTTIRHLSIVVRMMSSNGVQVTVVLLAGKLV 81
+QA RAS K+ V++ + NT++ H S + + + + L + +
Sbjct: 200 LQAARASSAAKPPPKASQKNEKVSLTSIKNTSLSHFS---KFNFKYALPIHMSLENRRSL 256
Query: 80 EN*VKSSSTWKIIE 39
EN ++ +TW I+E
Sbjct: 257 ENLFRNMNTWDILE 270
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 616 SRKFKVSRSSAKRSSHALSHIKIISCEQFVRARKLILSLLLFIPRARLSTL--YAVIKFI 443
S K K+ SS + S L + + CEQF+ + +L + + + L +L + + F+
Sbjct: 3827 SLKEKLRSSSVDKMSCQLLMLFLPVCEQFINLAESVLDYFINVHNSNLDSLSKISTLFFM 3886
Query: 442 LSNPSSISKD 413
++N S D
Sbjct: 3887 VANNGFCSPD 3896
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 3.5
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 348 VYHSLLLAYLSSGGQT-EEALRKSLEIEDGLDKINLMTAYKVDKRARGINNNSDSMSLRA 524
VY+SL L + G T EA + + IE +I T+ + I N+D +S +
Sbjct: 740 VYYSL--TNLDNPGATVNEAAKTAATIEQNEHEIQ--TSVDPISNVKAILPNADDVSSKN 795
Query: 525 RTNCSQLMILMCDNAWLDLFA 587
+ QL L C N+ ++F+
Sbjct: 796 SSTEDQLECLRCGNSLFNVFS 816
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 441 YPIHPRFLKISSELLQFVRRMRDMQVAM 358
+P P L + SEL+QF RR +Q M
Sbjct: 460 FPSSPSSLPLLSELIQFSRRPSPVQTGM 487
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 624 GRCPVTTSIAGCLVVTKNHISGFKFPGLW 710
G VT + CL +TK S FK G+W
Sbjct: 92 GLAQVTFGVGSCLGITKFIYSIFKQTGIW 120
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 469 TLYAVIKFILSNPSSISKDFLRASSVCP 386
+L++ ++ IL +P+S LRA +CP
Sbjct: 544 SLFSTLRIILEHPNSSRLQKLRAPGLCP 571
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 495 NNSDSMSLRARTNCSQLMILMCDNAWLDLFAEDLETL 605
NN D+ ++R NC+Q +L N +L+ + ++ +
Sbjct: 103 NNDDAPTIRCALNCTQEFLLSFSNESKELYLKAVDVV 139
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -1
Query: 472 STLYAVIKFILSNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVL 293
ST V L N + + L S C P + A+ + W+ E G + T S VL
Sbjct: 1591 STFTNVSPHDLLNSLAYTVSSLEVSQRCSPKQSGATRSVWFNELGPLTLSFLPTLSDTVL 1650
Query: 292 K 290
K
Sbjct: 1651 K 1651
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 439 SNPSSISKDFLRASSVCPPDERYASSNEWYTEKGEK 332
SN S+ K+ +A + PP ++ ++E EKGE+
Sbjct: 296 SNDSASRKEKPKARASTPPPLNFSRASEHRNEKGER 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,070
Number of Sequences: 5004
Number of extensions: 62816
Number of successful extensions: 206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -