Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30651
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0414 + 18824347-18825161,18826018-18828229 32 0.52
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 31 0.91
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564... 29 2.8
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 29 3.7
06_03_1214 + 28469848-28473048 29 4.9
03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322... 28 6.4
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726... 28 8.5
02_02_0693 + 13006243-13006245,13006439-13006501,13006608-130066... 28 8.5
>12_02_0414 + 18824347-18825161,18826018-18828229
Length = 1008
Score = 31.9 bits (69), Expect = 0.52
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Frame = +3
Query: 420 EIEDGLDKINLMTAYKVDKRARGINNNSDSMSLRARTNCSQL----MILMCDNAWLDLFA 587
E +D ++ T Y++ + IN+N+D M+LR T C L +++ D+ D
Sbjct: 228 ESKDDAARLLKETVYQLHCASADINDNTDIMTLR-ETICKFLEDKRYLIVIDDVRKDEVW 286
Query: 588 EDLETLNFRENPGRCPVTTSIAGCLVVTKNHISGFKF 698
++E +E+ R VTTS+ V K + GF +
Sbjct: 287 AEIEGAFPKESSSRIIVTTSVQS--VAKKCSLGGFMY 321
>09_06_0187 +
21433842-21433887,21434504-21435246,21435437-21435484,
21435929-21436814,21436967-21437056,21437543-21438417
Length = 895
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 549 ILMCDNAWLDLFAEDLETLNFRENPGRCPVTTSIA 653
+L DNAWL++ A + NF P C S+A
Sbjct: 55 LLSADNAWLEVAANTSRSPNFFATPSNCLTDASVA 89
>03_04_0044 +
16754638-16754676,16755472-16755598,16756325-16756451,
16756866-16757431,16757896-16758211,16758373-16758613,
16758734-16758823,16759343-16759780,16759877-16760185,
16760392-16760406
Length = 755
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Frame = +1
Query: 208 YKDDSSKKLNPEARTACITASWDSR*IFLIQSTTLY-----PMTTYSSHLSQYTTHC-YL 369
YKD++ LNP+A TA + + I ++ ST Y PM+ ++++L + H +
Sbjct: 637 YKDNNLYTLNPQAETADVWIQAPTD-IPVMPSTPFYNMMGQPMSPHTAYLPPHNGHAPFS 695
Query: 370 HISHPA 387
+ HPA
Sbjct: 696 PVQHPA 701
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 130 DIIRTTMLRCLIVVLFVVSTVTSQCFYKDDSSKKL 234
D + TT +R L V+ VVS T CF DDS+ K+
Sbjct: 79 DGVETTNVRVLGRVVSVVSRDTDVCFTLDDSTGKI 113
>06_03_1214 + 28469848-28473048
Length = 1066
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 85 NLPARRTTVTCTPLEDIIRTTMLRCLIVVLFVVSTVTSQCFYKDDSS 225
NLP ++ T T + R L+++L ++ TS C +++SS
Sbjct: 5 NLPCSSSSSTTTTTTTKLSVAFFRLLVILLLSFASPTSSCTEQEESS 51
>03_06_0124 -
31830797-31831371,31831510-31831532,31832143-31832271,
31833287-31834842
Length = 760
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 360 LLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTAYKV 470
L+ Y++ G T RKS++ E+GL ++ +T K+
Sbjct: 461 LVYKYMAKGDLTSALHRKSVDAEEGLRSLDWITRLKI 497
>04_04_1528 +
34172149-34172233,34172335-34172414,34172621-34172689,
34172780-34172837,34173296-34173357,34173441-34173554,
34173862-34173964,34174085-34174134,34174335-34174724,
34174918-34175244,34175360-34175689
Length = 555
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = -1
Query: 430 SSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLKRFNVNPSWPLYK 254
+ IS+D L A +V P E AS+N + ++ G+K L S T+ + LK+ + PL K
Sbjct: 87 NEISQDTL-AHAVRHPSELPASANWFNSKSGKKIPLRSVTSIIDGLKKSYIEKLRPLEK 144
>02_02_0693 +
13006243-13006245,13006439-13006501,13006608-13006687,
13007964-13008072,13009027-13009074,13011044-13011203,
13011295-13011458,13011549-13011902
Length = 326
Score = 27.9 bits (59), Expect = 8.5
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = -1
Query: 523 ARKLILSLLLFIPRARLSTLYAVIKFILSNPSS--ISKDFLRASSVCPPDERYASSNEWY 350
ARK+ L + L P A +T A +KF S + ++A+S+ P S N+
Sbjct: 222 ARKMGLGVRLLPPSAEDATAAASVKFASKFEKSRRDKRAAIKAASIFPESSSSTSKNKLD 281
Query: 349 TEKGEKNMLSSGTASLIVLKRFNVNPS 269
+N + +G AS ++ R V PS
Sbjct: 282 LALKRRN-IKAGAASALMASR--VKPS 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,291,979
Number of Sequences: 37544
Number of extensions: 394757
Number of successful extensions: 1100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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