Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30651
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32705| Best HMM Match : VWA (HMM E-Value=2e-27)                     35   0.076
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      31   0.93 
SB_33830| Best HMM Match : Toxin_16 (HMM E-Value=1.4)                  29   2.8  
SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95)                    28   6.6  
SB_28799| Best HMM Match : SEC-C (HMM E-Value=0.95)                    28   6.6  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_20396| Best HMM Match : SEC-C (HMM E-Value=1.5)                     28   6.6  
SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)                   28   8.7  
SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)                     28   8.7  
SB_9619| Best HMM Match : Vps16_N (HMM E-Value=2e-07)                  28   8.7  
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)                   28   8.7  
SB_355| Best HMM Match : zf-UBR1 (HMM E-Value=2e-20)                   28   8.7  

>SB_32705| Best HMM Match : VWA (HMM E-Value=2e-27)
          Length = 316

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 453 MTAYKVDKRARGINNNSDSMSLRARTNCSQLMILMCDNAWLDLFAEDLETLNFRENPGRC 632
           +T   V+  A G+N+N+D  SL    + ++ +      A LD     +E    +E PG+C
Sbjct: 130 LTDLGVNMIAIGVNSNADQASLAELASENRFIFSANSPAELDALWPSIEAQMCQEKPGKC 189

Query: 633 PVTTSIAG-CLVVTKNHI 683
           P +    G C  VT   I
Sbjct: 190 PPSPPSGGSCGDVTPEEI 207


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 276 FTLNLFNTINDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALRKS 416
           F L+L   +       N+F+SP S+  +L + YL + G T   + K+
Sbjct: 13  FALDLHRVLTAQDGQTNLFYSPASIVVALAMTYLGARGNTATQMTKT 59


>SB_33830| Best HMM Match : Toxin_16 (HMM E-Value=1.4)
          Length = 168

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 450 LMTAYKVDKRARGINNNSDSMSLRARTNCSQLMILMCDNAWLDLF-AEDLETL 605
           L+ AY+++++     NN+ SM  R   +C ++  L  +   + LF ++D +TL
Sbjct: 9   LVHAYELNRKLSDPTNNARSMDQRLLAHCRRVCFLKLNELAISLFESDDYKTL 61


>SB_49976| Best HMM Match : SEC-C (HMM E-Value=0.95)
          Length = 1037

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 459 AYKVDKRARGINNNSDSMSLR--ARTNCSQLMILMCDNAWLDLFAED 593
           +YK DKR   I  N  S+SLR  A +   + M+ + D+   DL A D
Sbjct: 122 SYKKDKRLLNIATNEASLSLRQAATSKGDEKMLRLLDSVRDDLCAAD 168


>SB_28799| Best HMM Match : SEC-C (HMM E-Value=0.95)
          Length = 710

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 459 AYKVDKRARGINNNSDSMSLR--ARTNCSQLMILMCDNAWLDLFAED 593
           +YK DKR   I  N  S+SLR  A +   + M+ + D+   DL A D
Sbjct: 133 SYKKDKRLLNIATNEASLSLRQAATSKGDEKMLRLLDSVRDDLCAAD 179


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 75   ILNQFTRKENNSYLHTIRGHHSNHNAEVSNC 167
            I+N  +   NNS ++    +H+N+N  ++NC
Sbjct: 1720 IINNNSINNNNSSINNRSNNHNNNNNSINNC 1750


>SB_20396| Best HMM Match : SEC-C (HMM E-Value=1.5)
          Length = 715

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 459 AYKVDKRARGINNNSDSMSLR--ARTNCSQLMILMCDNAWLDLFAED 593
           +YK DKR   I  N  S+SLR  A +   + M+ + D+   DL A D
Sbjct: 244 SYKKDKRLLNIATNEASLSLRQAATSKGDEKMLRLLDSVRDDLCAAD 290


>SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)
          Length = 897

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = -1

Query: 598 SRSSAKRSSHALSHIKIISCEQFVRARKLILSLLLFIPRARLSTLYAVIKFILSNPSSIS 419
           +RSS    S  +S   ++ CE+    ++ + +  L  P  +    Y   KFI     ++ 
Sbjct: 40  TRSSFLSLSRRISSSCVLHCEKSTNQQEELKNTDLSKPAEKCPKYYVPRKFIPMTRKALL 99

Query: 418 KDFLRASSVCPPDER 374
           +  L   S+ P +ER
Sbjct: 100 RKILEDCSLVPSEER 114


>SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)
          Length = 610

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 28/127 (22%), Positives = 48/127 (37%)
 Frame = +3

Query: 324 NIFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTAYKVDKRARGINNNS 503
           N+   P + YH ++  Y    G+        + IE  +  I++ T +KV    R   N  
Sbjct: 301 NVVLQPNTWYH-VVYTYDYWTGRQRFYRDGVMAIESYIGGIDIATNFKV----RMGYNGG 355

Query: 504 DSMSLRARTNCSQLMILMCDNAWLDLFAEDLETLNFRENPGRCPVTTSIAGCLVVTKNHI 683
           D    + + +C Q+     D A ++   +    + F E  G C  T  +        N +
Sbjct: 356 DPRCFKGQVSCIQVFREALDAAQVNRLRDTCNNMVFPERYGACVKTVPLDTSTRDQNNIV 415

Query: 684 SGFKFPG 704
           SG    G
Sbjct: 416 SGIPSDG 422


>SB_9619| Best HMM Match : Vps16_N (HMM E-Value=2e-07)
          Length = 214

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 585 QRDQAMHCRTLRSSAANSLFALVNSYY 505
           Q  Q + CR  RSSA   L  L  SY+
Sbjct: 3   QMSQVIECRVFRSSAGTGLAILTGSYH 29


>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
          Length = 1410

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 459  AYKVDKRARGINNNSDSMSLR--ARTNCSQLMILMCDNAWLDLFAED 593
            +YK DKR   I  N  S+SLR  A +   + M+ + D+   DL A D
Sbjct: 883  SYKKDKRLLNIATNEASLSLRQAATSKGDEEMLRLLDSVRDDLCAAD 929


>SB_355| Best HMM Match : zf-UBR1 (HMM E-Value=2e-20)
          Length = 949

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +2

Query: 446 KFNDCV*SRQTSSRYKQQQR*YEFTSANKLFAADDLNVRQCMA----*SLCRRSRDFEFP 613
           +F+ C   RQ + R +QQ+   EF S  K F    LNV Q  A     SL   SR F + 
Sbjct: 760 RFSLCEIRRQRA-RERQQKLLAEFASKQKSFLEKTLNVGQGKASNIVSSLVNNSRKF-YE 817

Query: 614 GKSWALPRDYINSW 655
            K  AL    I+ W
Sbjct: 818 RKVEALKESNISRW 831


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,534,142
Number of Sequences: 59808
Number of extensions: 471609
Number of successful extensions: 1306
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)