Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30650
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    25   0.45 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.59 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    25   0.79 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   5.5  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 684 PLCRHSTQSGNNPLFAKLLLNRCFLKRP 601
           P  R + Q   N +   L LN+CF+K P
Sbjct: 118 PYYRENKQGWQNSIRHNLSLNKCFVKVP 145


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 602  GRLRKHLLRSSFAKSGLLPDCV 667
            G  R HL +  F K G++PD V
Sbjct: 1067 GAYRHHLSKMHFVKDGVIPDPV 1088


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 368 AKYHCCVCFFFNIL*QKVHWQTRSNSCYII 279
           A   C V   F+I  Q   W+T+ N+C +I
Sbjct: 70  ASVRCPVGLAFDIERQTCDWKTKVNNCDVI 99


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 690 MLPLCRHSTQSGNNPLFAKLLLNRCFLKRP 601
           + P  R + Q   N +   L  N CF+K P
Sbjct: 173 LFPFYRQNQQRWQNSIRHSLSFNDCFVKVP 202


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/33 (21%), Positives = 21/33 (63%)
 Frame = +2

Query: 563 YLSIPPKLRQPQNGRLRKHLLRSSFAKSGLLPD 661
           ++++   L+  QNG+++++L+ +    +  +PD
Sbjct: 552 HVNVSEILKMDQNGQIKRNLVDAPLKDTVTVPD 584


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,808
Number of Sequences: 336
Number of extensions: 3415
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)