Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30650
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    97   3e-21
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    27   2.6  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   7.9  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   7.9  

>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 46/84 (54%), Positives = 64/84 (76%)
 Frame = +3

Query: 255 NVIYHLESYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGTDELAQGYIYFRDAPSEKD 434
           +VIYHLE+YD+TTIRAS PMYLLS+ IK +    +V SGEG+DE+  GY+YF +APS + 
Sbjct: 318 DVIYHLETYDVTTIRASTPMYLLSRKIKAQ-GVKMVLSGEGSDEIFGGYLYFGNAPSREA 376

Query: 435 AHKESVRLLSDIYLYDGLRADRTT 506
            H E VR + +++L D LRA+++T
Sbjct: 377 FHSECVRRVKNLHLSDCLRANKST 400



 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = +1

Query: 124 KIQTFAIGMGDSPDLAAARTVADYLGTEHHEVQF 225
           K+ +FAIG+  SPDL AAR VAD+L T HHE  F
Sbjct: 274 KLHSFAIGLPGSPDLLAARKVADFLHTFHHEHTF 307



 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
 Frame = +2

Query: 509 AFSLELRVPFLDIQFTHHYLSIPPKLRQPQNGRLRKHLLRSSF------AKSGLLPDCVL 670
           A+ LE RVPFLD  F    L+I P+ +   NGR  K++LR +F      +    LP  +L
Sbjct: 402 AWGLEARVPFLDKDFLEVALNIDPEEKMYINGRKEKYILRKAFDTTHDSSLQPYLPQDIL 461

Query: 671 WRHK 682
           WR K
Sbjct: 462 WRQK 465


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = +3

Query: 255 NVIYHLESYDITTI----RASLPMYLLSKYIK-EKTDTTVVFSG--EGTDELAQGYIYFR 413
           N+++ LE+YD+T +    R+ L ++ L+ Y + E TD    F    EG D +        
Sbjct: 83  NMVFDLENYDLTDLDNFDRSKLLVFFLATYGEGEPTDNAEAFLQLLEGDDTVFSSGKGIE 142

Query: 414 DAPSE 428
           D P E
Sbjct: 143 DTPFE 147


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 312 MYLLSKYIKEKTDTTVVFSGEGTDELAQGYIYFRDAPSEKDAHKESVRLL 461
           MY+   Y+ E  D  V F G    ++ +  + + D+    D HK+ ++ L
Sbjct: 401 MYISDIYVNE--DDIVCFQGSLWTQIDKNALDYNDSADNIDEHKDDLKEL 448


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 306 LPMYLLSKYIKEKTDTTVVFSGEGTDELAQGYIYFRDAPSEKDAHKESVRLLSDIYLYDG 485
           L + L++  +KEKTD   + +   +  L   Y +F +       H   +  LS++YL   
Sbjct: 444 LEISLMNDTLKEKTDIFTMLTNSLSSFLVTDYDFFLEL-----KHLIDISSLSNLYLDSS 498

Query: 486 LRADR 500
           L A R
Sbjct: 499 LNAMR 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,576
Number of Sequences: 5004
Number of extensions: 59259
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)