Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30650
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1075 - 8770120-8770371,8770684-8770770,8770866-8770946,877...    97   2e-20
03_02_0643 - 10090720-10091007,10091121-10091228,10091314-100914...    90   1e-18
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428...    30   2.0  
03_05_0101 - 20803546-20803800,20803907-20804700,20804788-208050...    28   8.2  

>06_01_1075 -
           8770120-8770371,8770684-8770770,8770866-8770946,
           8771043-8771177,8771363-8771584,8771676-8771756,
           8771954-8772115,8772991-8773106,8774333-8774474,
           8774592-8774687,8774987-8775125,8776297-8776376
          Length = 530

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 43/83 (51%), Positives = 64/83 (77%)
 Frame = +3

Query: 258 VIYHLESYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGTDELAQGYIYFRDAPSEKDA 437
           VIYH+E+YD+TTIRAS PM+L+S+ IK      +V SGEG+DE+  GY+YF  AP++K+ 
Sbjct: 281 VIYHVETYDVTTIRASTPMFLMSRKIKS-LGVKMVLSGEGSDEIFGGYLYFHKAPNKKEF 339

Query: 438 HKESVRLLSDIYLYDGLRADRTT 506
           H+E+ R +  ++LYD LRA+++T
Sbjct: 340 HEETCRKIKALHLYDCLRANKST 362



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +1

Query: 13  KRLMSDRRIXXXXXXXXXXXXITAIVNYLAKEYKLPY----KIQTFAIGMGDSPDLAAAR 180
           KRLM+D               + ++V+    E K+      K+ TF IG+  SPDL AA+
Sbjct: 195 KRLMTDVPFGVLLSGGLDSSLVASVVSRHLAEAKVAAQWGNKLHTFCIGLKGSPDLRAAK 254

Query: 181 TVADYLGTEHHEVQF 225
            VADYLGT HHE+ F
Sbjct: 255 EVADYLGTVHHELHF 269



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
 Frame = +2

Query: 509 AFSLELRVPFLDIQFTHHYLSIPP--KLRQPQNGRLRKHLLRSSF--AKSGLLPDCVLWR 676
           A+ +E RVPFLD  F +  + I P  K+ +   GR+ K +LR++F   +   LP  +L+R
Sbjct: 364 AWGVEARVPFLDKNFINVAMDIDPEWKMIKRDLGRIEKWVLRNAFDDEEKPYLPKHILYR 423

Query: 677 HK 682
            K
Sbjct: 424 QK 425


>03_02_0643 -
           10090720-10091007,10091121-10091228,10091314-10091400,
           10091488-10091568,10091669-10091803,10091919-10092140,
           10092377-10092457,10092565-10092726,10092851-10093041,
           10093190-10093331,10093449-10093547,10093668-10093806,
           10094355-10094392
          Length = 590

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 42/83 (50%), Positives = 61/83 (73%)
 Frame = +3

Query: 258 VIYHLESYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGTDELAQGYIYFRDAPSEKDA 437
           VIYH E+YD+TTIRAS PM+L+++ IK      +V SGEG+DEL  GY+YF  AP++++ 
Sbjct: 293 VIYHDETYDVTTIRASTPMFLMARKIKA-LGVKMVLSGEGSDELLGGYLYFHFAPNKEEF 351

Query: 438 HKESVRLLSDIYLYDGLRADRTT 506
           HKE+ R +  ++ YD LRA++ T
Sbjct: 352 HKETCRKVKALHQYDCLRANKAT 374



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = +1

Query: 112 KLPYKIQTFAIGMGDSPDLAAARTVADYLGTEHHEVQFDEND 237
           K   ++ +F +G+  SPDL AAR VAD+LGT HHE  F   D
Sbjct: 244 KFGAELHSFVVGLEGSPDLIAAREVADHLGTIHHEFHFTVQD 285



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
 Frame = +2

Query: 509 AFSLELRVPFLDIQFTHHYLSIPP--KLRQPQNGRLRKHLLRSSF--AKSGLLPDCVLWR 676
           A+ LE+RVPFLD +F +  +S+ P  K+     GR+ K ++R +F   +   LP  +L+R
Sbjct: 376 AWGLEVRVPFLDKEFINVAMSMDPEWKMYNADLGRIEKWVMRKAFDDEEHPYLPKHILYR 435

Query: 677 HK 682
            K
Sbjct: 436 QK 437


>04_03_0832 +
           20139299-20139520,20139822-20141114,20142697-20142822,
           20143322-20143442,20144213-20144481
          Length = 676

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 148 MGDSPDLAAARTVADYLGTEHH 213
           +GD+PD    R  ADYL + HH
Sbjct: 240 LGDAPDTELTRLAADYLRSTHH 261


>03_05_0101 -
           20803546-20803800,20803907-20804700,20804788-20805042,
           20805143-20805263,20805716-20805768,20805979-20806239,
           20806734-20806784,20806900-20807148,20807257-20807479,
           20807737-20807910
          Length = 811

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 261 IYHLESYDITTIRASLPMYLLSKYIKEKTD 350
           IY L  YD+  +RA  P Y++  + + K D
Sbjct: 277 IYDLVKYDVGVLRAFNPKYIIDYFRRNKKD 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,123,817
Number of Sequences: 37544
Number of extensions: 362856
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)