Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30649
         (713 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    24   1.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   1.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   4.3  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.9  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   9.9  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 119 PITGQQGVAAAAASIRTPLVSQSSRPANYKYTPN 220
           P T       ++A   TPL+  +   +NY YTP+
Sbjct: 8   PSTTTTTTTTSSALNSTPLIEFNISTSNYLYTPS 41


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 119 PITGQQGVAAAAASIRTPLVSQSSRPANYKYTPN 220
           P T       ++A   TPL+  +   +NY YTP+
Sbjct: 8   PSTTTTTTTTSSALNSTPLIEFNISTSNYLYTPS 41


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 2   PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDA 115
           P  + S+   +   ++ PT  P P  P +  +  S DA
Sbjct: 78  PSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDA 115


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -3

Query: 405 NFQKHTSYFPSQIRVHSLNKWKQSFPKHLFLFLEW 301
           NF +H     + + ++    W ++ P+ L  FL W
Sbjct: 408 NFDRHYEENRAPLGLYFHAAWLKNNPEFLDAFLYW 442


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 312 TETDAWGTTVSTYSENAP 365
           TET  WG+  +T  E  P
Sbjct: 257 TETKTWGSVFNTVLELMP 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,890
Number of Sequences: 336
Number of extensions: 3035
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)