Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30649
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 76 6e-15
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.12
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 31 0.22
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 29 0.66
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 28 1.2
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 28 1.5
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 27 2.0
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 2.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.0
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 3.5
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ... 27 3.5
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 4.7
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 26 4.7
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 26 4.7
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.7
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c... 26 4.7
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 8.1
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 8.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 8.1
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 8.1
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 75.8 bits (178), Expect = 6e-15
Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 223 AQPTSSTTSSAIQGQ-EPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLL 399
A P + A+ G E T+ LAA P + +KQ+LGE L+P + L+GKITGMLL
Sbjct: 554 AGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLL 613
Query: 400 EIDNSELLHMLEHAESLKAKVDEAVAVLQ 486
E+ NSELL +LE +L +V+EA+ VLQ
Sbjct: 614 EMPNSELLELLEDDSALNERVNEAIGVLQ 642
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.12
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRA---PAQSTIRTSLDA--RPITGQQGVAAAAASIR 166
PP+ PS ++ + PAP P+ T+ + ++ RPI A ++ +
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289
Query: 167 TPLVSQSSRPANYKYTPNMRNPPAPQP 247
PL SSR + N + PP P P
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPP 316
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +2
Query: 65 PAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVSQSSRPANYKYTPNMRNPPAPQ 244
P P P +S S+ P QG +A S +P + + NPPAP
Sbjct: 337 PPPPPPPRSNAAGSIPLPP----QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Query: 245 PAV 253
PA+
Sbjct: 393 PAI 395
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 30.7 bits (66), Expect = 0.22
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 496 LDEPAVQQQLHLL*LSETLHVLTYEEVLNYQFPKAYQLFSQPNQGAFSE 350
+ E QQQ H++ + E +H + E + K L Q +GAF E
Sbjct: 243 IHEEYEQQQAHIVRMEELIHAVEKERKTETDYMKKESLSEQKERGAFME 291
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 29.1 bits (62), Expect = 0.66
Identities = 20/88 (22%), Positives = 38/88 (43%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVS 181
PP +T ASA + P ++ + T + ++ V+ +A+S
Sbjct: 125 PPTNSTTSQASAKHSAVPHRSSQFQSTTLTPSTTDSSSTDVSSSDSVSTSASSSNASNTV 184
Query: 182 QSSRPANYKYTPNMRNPPAPQPAVLSKD 265
+ PA+ TP + N P+ Q ++SK+
Sbjct: 185 SVTSPASSSATP-LPNQPSQQQFLVSKN 211
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +2
Query: 14 PSTQAASAYANMQP---TYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVSQ 184
P + AASAY++ P R P APA ++ SL ++P++ V + +I T +S
Sbjct: 237 PVSTAASAYSSSLPISDVTRALPLAPASNSQHPSLSSQPVS----VPSNTINIPTDSLSI 292
Query: 185 SSRPA 199
S P+
Sbjct: 293 VSNPS 297
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 289 LAAAPLQEQKQMLGERLF-PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVD 465
L +A +Q+ +M G+ F P ++R H D GK + + LLH L + K++
Sbjct: 290 LESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALEGRSGHINLLHALTGQFATSFKIE 349
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 65 PAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVSQSSRPANYKYTPNMRNPP 235
P P A + + + + T Q +A++A S P +Q SRPA P+ PP
Sbjct: 529 PCPCRLATTHVEPT-EVTAFTTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPP 584
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAAS-IRTPLV 178
PPV P+ + +A + PAP ++ + T A A+AS + + L
Sbjct: 351 PPVNPTIKVTAAIPSPLQNTNPAPSTFPNPSVASPAFPNSSTSNPSTAPASASPLASTLK 410
Query: 179 SQSSRPANYKYTPNMRNPPAPQP 247
++ N + + NP P
Sbjct: 411 PSTANDTNGSSSSSSSNPRTSSP 433
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/88 (26%), Positives = 33/88 (37%)
Frame = +2
Query: 11 RPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVSQSS 190
RP A A N T AP +TI+ + +AAS + + S+
Sbjct: 1025 RPPAPAMQARPNT--TQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSA 1082
Query: 191 RPANYKYTPNMRNPPAPQPAVLSKDKNL 274
AN P+ PP P P + K+L
Sbjct: 1083 PVANNVSKPSAVPPPPPPPPAEVEKKDL 1110
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 38 YANMQPTYRPAPRAPAQSTIRTSLDARP-ITGQQGVAAAAASI 163
Y QP+Y P P+ +T+ + L P +T G + A+SI
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTVSSGPLSTASSI 313
>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 379 KITGMLLEIDNSELLHMLEHAE-SLKAKVDEAVAVLQAHQAKQQELKKNKYSE 534
K+ ++ LL LE +E SL+ +VD + ++ + + QELK YS+
Sbjct: 63 KVGDAFFQVSLPVLLDQLEQSEESLEKQVDVLRSSMEKDETRIQELKSMLYSK 115
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 349 IQRMHPDLAGKITGMLLEID-NSELLHMLEHAESLKAKVDEAV 474
+QR++P ++ G LL+ID + EL+ L + + VDE V
Sbjct: 801 VQRINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELV 843
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 5 PVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDAR 118
PV PS+ A+ N+ PT + A ST LDA+
Sbjct: 251 PVSPSSMASRRGLNIPPTLKQAVSETPFSTFSDILDAK 288
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRP 67
P VRP+ +AAS+Y +P++ P
Sbjct: 134 PKVRPARRAASSYVPSRPSHVP 155
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 62 RPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIR----TPLVSQSSRPANY 205
R A AP ++ + TS + P T G A+ + PL SQSSR +NY
Sbjct: 17 RTAYAAPQRAAVDTSNVSPPSTQTGGYASKDTTSTYEGAQPLSSQSSRSSNY 68
>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 154
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 409 NSELLHMLEHAESLKAKVDEAVAVLQAHQAKQQELKKNKYSEKLAGI 549
N+ELLH+++ +L + +E L+ A QQ+ N EKLA +
Sbjct: 100 NAELLHIMKELVNLD-REEEGSVPLKTLDAIQQQRLHNPSFEKLASM 145
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -3
Query: 342 KQSFPKHLFLFLEWCCCKHSRGQRFLSLDSTAGCGAGGLRMFGVY 208
K S K L + WCC + Q F +DS G L V+
Sbjct: 808 KDSSGKKLSEDIVWCCISYIIRQTFDKIDSLRGLAYQALEQIRVH 852
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPI 124
P + P Q + T++P PR P Q + T RP+
Sbjct: 701 PTLHPQGQLPIQNVEQRATHKPLPRPPVQ--VETREPVRPV 739
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/63 (22%), Positives = 25/63 (39%)
Frame = +2
Query: 80 PAQSTIRTSLDARPITGQQGVAAAAASIRTPLVSQSSRPANYKYTPNMRNPPAPQPAVLS 259
P S+ ++ QQ + P ++PA Y+ TP+ P P ++S
Sbjct: 480 PKDSSSTSTQPTEQSNAQQAPSPKEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLMS 539
Query: 260 KDK 268
D+
Sbjct: 540 ADQ 542
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 406 DNSELLHMLEHAESLKAKVDEAVAVLQAHQAKQQELKKNK 525
+NS +H+ E L+AK DE +Q A ++ K+N+
Sbjct: 336 ENSSYVHLQEDYAILQAKCDEFADRIQVLTADLEKEKENQ 375
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 346 LIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVLQAHQAKQ 504
L+Q++ PDL +LE + E L+ LK +++E L+ + + Q
Sbjct: 192 LVQQISPDLPRTELLKILEAKHPEFQLFLDELNQLKPQLNEIKEKLKTYPSSQ 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,346
Number of Sequences: 5004
Number of extensions: 49339
Number of successful extensions: 213
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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