Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30649
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 100 1e-21
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 100 1e-21
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 100 1e-21
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 100 1e-21
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 93 2e-19
Z49908-6|CAA90100.3| 327|Caenorhabditis elegans Hypothetical pr... 33 0.27
AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical ... 33 0.27
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 30 1.9
AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical ... 30 1.9
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 29 2.5
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 29 2.5
Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical pr... 29 3.3
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical pr... 28 5.8
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 28 7.6
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 28 7.6
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 28 7.6
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 28 7.6
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 28 7.6
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 28 7.6
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 28 7.6
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 28 7.6
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 100 bits (239), Expect = 1e-21
Identities = 51/82 (62%), Positives = 66/82 (80%), Gaps = 2/82 (2%)
Frame = +1
Query: 256 IQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHM 429
I GQEPLTS MLAAA QEQKQ+LGER++ LI++++P AGKITGM+LEIDNSEL+ M
Sbjct: 563 IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMM 622
Query: 430 LEHAESLKAKVDEAVAVLQAHQ 495
L+ +E ++KVDEA +VL + Q
Sbjct: 623 LQDSELFRSKVDEAASVLVSAQ 644
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 100 bits (239), Expect = 1e-21
Identities = 51/82 (62%), Positives = 66/82 (80%), Gaps = 2/82 (2%)
Frame = +1
Query: 256 IQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHM 429
I GQEPLTS MLAAA QEQKQ+LGER++ LI++++P AGKITGM+LEIDNSEL+ M
Sbjct: 503 IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMM 562
Query: 430 LEHAESLKAKVDEAVAVLQAHQ 495
L+ +E ++KVDEA +VL + Q
Sbjct: 563 LQDSELFRSKVDEAASVLVSAQ 584
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 100 bits (239), Expect = 1e-21
Identities = 51/82 (62%), Positives = 66/82 (80%), Gaps = 2/82 (2%)
Frame = +1
Query: 256 IQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHM 429
I GQEPLTS MLAAA QEQKQ+LGER++ LI++++P AGKITGM+LEIDNSEL+ M
Sbjct: 500 IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMM 559
Query: 430 LEHAESLKAKVDEAVAVLQAHQ 495
L+ +E ++KVDEA +VL + Q
Sbjct: 560 LQDSELFRSKVDEAASVLVSAQ 581
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 100 bits (239), Expect = 1e-21
Identities = 51/82 (62%), Positives = 66/82 (80%), Gaps = 2/82 (2%)
Frame = +1
Query: 256 IQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHM 429
I GQEPLTS MLAAA QEQKQ+LGER++ LI++++P AGKITGM+LEIDNSEL+ M
Sbjct: 563 IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMM 622
Query: 430 LEHAESLKAKVDEAVAVLQAHQ 495
L+ +E ++KVDEA +VL + Q
Sbjct: 623 LQDSELFRSKVDEAASVLVSAQ 644
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 93.1 bits (221), Expect = 2e-19
Identities = 49/83 (59%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
Frame = +1
Query: 256 IQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHM 429
I GQE LTS MLA A QEQKQ+LGER++ LI++M P+ AGKITGM+LEIDN+EL+ M
Sbjct: 598 IHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMM 657
Query: 430 LEHAESLKAKVDEAVAVLQAHQA 498
L+ AE ++KV+EA VL Q+
Sbjct: 658 LQDAELFRSKVEEAFGVLTNAQS 680
>Z49908-6|CAA90100.3| 327|Caenorhabditis elegans Hypothetical
protein C07E3.6 protein.
Length = 327
Score = 32.7 bits (71), Expect = 0.27
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Frame = +1
Query: 214 TKHAQPTSS----TTSSAIQGQEPLTSTMLAAAPLQEQ--KQMLGERLFPLIQRMHPDLA 375
T HA P SS TTSS +EP T +A AP+ K +L +R + +HP +
Sbjct: 52 TPHANPDSSSVPTTTSSDEHQEEPPTPKTIAPAPIATPVLKPLLPQRESIVSNGIHPVVV 111
Query: 376 GKITGMLLEIDNSEL 420
+ + EID E+
Sbjct: 112 KRKQSIAEEIDTPEI 126
>AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical
protein T27C4.2 protein.
Length = 643
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +1
Query: 226 QPTSSTTSSAIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEI 405
+P TT+ + EP T+T L PL+ +++LGE + ++ + D+ + E
Sbjct: 250 EPPQPTTTVPQEAAEPTTTTTLQ--PLESTRRILGEEIEKSVENLEKDIEESVKNG-SEK 306
Query: 406 DNSELLHMLEHAE-SLKAKVDEAVAVLQ 486
N + +E + L+ +++EA LQ
Sbjct: 307 MNDKTAQAVEQIDLELEKRLEEAAKQLQ 334
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/83 (28%), Positives = 30/83 (36%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVS 181
PP R ST A A PA RAP +T RP A+ +R P
Sbjct: 295 PPPRGSTAAPGTRAPPATRAPPATRAPPATTRAPPATTRP------APASQPPVREPETP 348
Query: 182 QSSRPANYKYTPNMRNPPAPQPA 250
S P+ P +P P P+
Sbjct: 349 DSGYPSPAPQEPAHPSPSYPSPS 371
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +2
Query: 5 PVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVA---AAAASIRTPL 175
P +P+ Q A P P+P PAQ A+P+T QQ A + +A ++ P
Sbjct: 399 PPKPAPQQAPPVQQNPPKPTPSPAPPAQK-------AQPVTQQQASAPPTSPSAPVQAP- 450
Query: 176 VSQSSRPANYKYTPNMRNPPAPQPAVLSK 262
+ ++ A+ + ++PP +P++ S+
Sbjct: 451 -NTPTQKASSQDPIVQQDPPPKEPSISSE 478
>AC024136-3|AAF35959.2| 470|Caenorhabditis elegans Hypothetical
protein F54A3.6 protein.
Length = 470
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +2
Query: 62 RPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVSQSSRPANYKYTPNMRNPPAP 241
+P P P+ + P + V A + PL +Q S ++ Y+ N NP P
Sbjct: 321 KPNPPPPSAGYFFQAPPPAPASSSSTVPPAVSPFGVPLGAQPSTTSSTTYSSNYSNPSYP 380
Query: 242 QP 247
P
Sbjct: 381 PP 382
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
protein R13G10.1 protein.
Length = 1469
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = +1
Query: 268 EPLTSTMLAAAPLQEQKQMLGERLFPLIQ--RMHPDLAGKITGMLLEI--DNSELLHMLE 435
+ L +M A A L + L + + Q + +L G + M+ E DN+EL +
Sbjct: 496 DELLQSMRAKAELDVSESELKDMTIMMEQGQKRVDELKGTLQTMMAENIRDNTELNAVTT 555
Query: 436 HAESLKAKVDEAVAVLQAHQAKQQELKKNKY 528
+ K K D+AV L ++ +Q L+ KY
Sbjct: 556 ELQDRKLKFDKAVEKLPHLKSTEQLLRSKKY 586
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = +1
Query: 268 EPLTSTMLAAAPLQEQKQMLGERLFPLIQ--RMHPDLAGKITGMLLEI--DNSELLHMLE 435
+ L +M A A L + L + + Q + +L G + M+ E DN+EL +
Sbjct: 496 DELLQSMRAKAELDVSESELKDMTIMMEQGQKRVDELKGTLQTMMAENIRDNTELNAVTT 555
Query: 436 HAESLKAKVDEAVAVLQAHQAKQQELKKNKY 528
+ K K D+AV L ++ +Q L+ KY
Sbjct: 556 ELQDRKLKFDKAVEKLPHLKSTEQLLRSKKY 586
>Z50176-4|CAA90541.1| 546|Caenorhabditis elegans Hypothetical
protein C09G1.4 protein.
Length = 546
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 164 RTPLVSQSSRPANYKYTPNMRNP----PAPQPAVLSKDKNL 274
RTP V+ SSR + TPN R P P PQP + ++L
Sbjct: 205 RTPPVACSSRTGTLQRTPNRRLPISSTPQPQPTYADQMQSL 245
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/83 (28%), Positives = 33/83 (39%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVS 181
P P+T AA+ P PAP A A + DA ++ A A A+ TP +
Sbjct: 511 PIEAPATDAATLETAPAPAAEPAPAAEAAA----GYDAPSSVPEETPAPAPAADETPAPA 566
Query: 182 QSSRPANYKYTPNMRNPPAPQPA 250
++ P PAP PA
Sbjct: 567 PAAEETPAP-APAAEETPAPAPA 588
>Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical
protein F37D6.3 protein.
Length = 169
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 256 IQGQEPLTSTMLAAAPLQEQKQMLGERLF 342
+ Q P MLAAA QEQ +LG+R++
Sbjct: 97 MMAQGPGVYPMLAAAAPQEQNHLLGDRIY 125
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = -1
Query: 446 DSACSNI*RSSELSISKSIPVIFPAKSGCIL*ISGNSRSPSICFCSWSGAAASIVEVRGS 267
DSAC N+ RS + +P+ PA CI I G + C S S + I +V S
Sbjct: 94 DSACINLVRSGPSCDQQCMPLCLPA---CINAIQGPTECAPQCMPSCS--SNCIQQVFPS 148
Query: 266 CP 261
CP
Sbjct: 149 CP 150
>Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical
protein F29C12.1b protein.
Length = 590
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 427 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 326
Y + N QF YQ F QP Q +++ + PQ
Sbjct: 338 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 371
>Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical
protein F29C12.1a protein.
Length = 592
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 427 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 326
Y + N QF YQ F QP Q +++ + PQ
Sbjct: 340 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 373
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 170 PLVSQSSRPANYKYTPNMRNPPAPQPAVLS 259
P V + R AN T N+R P+P P+ LS
Sbjct: 1173 PQVQTAHRGANSSSTANIRRVPSPTPSSLS 1202
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
T14G10.2a protein.
Length = 1470
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 170 PLVSQSSRPANYKYTPNMRNPPAPQPAVLS 259
P V + R AN T N+R P+P P+ LS
Sbjct: 1173 PQVQTAHRGANSSSTANIRRVPSPTPSSLS 1202
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 170 PLVSQSSRPANYKYTPNMRNPPAPQPAVLS 259
P V + R AN T N+R P+P P+ LS
Sbjct: 1173 PQVQTAHRGANSSSTANIRRVPSPTPSSLS 1202
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 170 PLVSQSSRPANYKYTPNMRNPPAPQPAVLS 259
P V + R AN T N+R P+P P+ LS
Sbjct: 1173 PQVQTAHRGANSSSTANIRRVPSPTPSSLS 1202
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/90 (27%), Positives = 35/90 (38%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVS 181
PPV ++ AA+AY + P P P P +RT + I G I P+
Sbjct: 186 PPVMTASAAAAAYRDRLP---PPPPKPPMPDLRTK-EPIGIRSWNGSGIPPPPILPPVAC 241
Query: 182 QSSRPANYKYTPNMRNPPAPQPAVLSKDKN 271
SS +P M P P+ S + N
Sbjct: 242 LSS-----TMSPGMLRSPVPRERFNSVESN 266
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 170 PLVSQSSRPANYKYTPNMRNPPAPQPAVLS 259
P V + R AN T N+R P+P P+ LS
Sbjct: 1050 PQVQTAHRGANSSSTANIRRVPSPTPSSLS 1079
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 170 PLVSQSSRPANYKYTPNMRNPPAPQPAVLS 259
P V + R AN T N+R P+P P+ LS
Sbjct: 1173 PQVQTAHRGANSSSTANIRRVPSPTPSSLS 1202
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 170 PLVSQSSRPANYKYTPNMRNPPAPQPAVLS 259
P V + R AN T N+R P+P P+ LS
Sbjct: 1173 PQVQTAHRGANSSSTANIRRVPSPTPSSLS 1202
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 170 PLVSQSSRPANYKYTPNMRNPPAPQPAVLS 259
P V + R AN T N+R P+P P+ LS
Sbjct: 1173 PQVQTAHRGANSSSTANIRRVPSPTPSSLS 1202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,519,572
Number of Sequences: 27780
Number of extensions: 291243
Number of successful extensions: 1425
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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