Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30649
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 83 1e-16
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 76 2e-14
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 75 4e-14
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 75 5e-14
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 74 8e-14
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 69 4e-12
At3g19350.1 68416.m02455 polyadenylate-binding protein-related /... 66 2e-11
At1g30050.1 68414.m03674 hypothetical protein 32 0.33
At1g06760.1 68414.m00718 histone H1, putative similar to histone... 32 0.33
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 31 0.57
At3g28930.1 68416.m03613 avrRpt2-induced AIG2 protein (AIG2) ide... 31 0.57
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 30 1.3
At5g40560.1 68418.m04922 DegP protease, putative contains simila... 29 2.3
At3g08670.1 68416.m01007 expressed protein 29 2.3
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res... 29 2.3
At4g01450.3 68417.m00186 nodulin MtN21 family protein similar to... 29 3.1
At1g07310.1 68414.m00778 C2 domain-containing protein contains s... 29 3.1
At2g36830.1 68415.m04516 major intrinsic family protein / MIP fa... 29 4.0
At2g11090.1 68415.m01187 expressed protein 29 4.0
At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family... 28 5.3
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 28 5.3
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 28 7.1
At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger) fa... 28 7.1
At5g37250.1 68418.m04475 zinc finger (C3HC4-type RING finger) fa... 28 7.1
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 28 7.1
At2g31090.1 68415.m03797 expressed protein 28 7.1
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 28 7.1
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 27 9.3
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 27 9.3
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 27 9.3
At3g51960.2 68416.m05700 bZIP family transcription factor contai... 27 9.3
At3g51960.1 68416.m05699 bZIP family transcription factor contai... 27 9.3
At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family... 27 9.3
At2g03070.1 68415.m00260 expressed protein 27 9.3
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 27 9.3
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/76 (52%), Positives = 60/76 (78%)
Frame = +1
Query: 280 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 459
+T LA A ++Q+ MLGE L+PL++++ P+ A K+TGMLLE+D +E+LH+LE E+LKAK
Sbjct: 578 ATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAK 637
Query: 460 VDEAVAVLQAHQAKQQ 507
V EA+ VL++ A+QQ
Sbjct: 638 VTEAMDVLRS-VAQQQ 652
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/71 (49%), Positives = 56/71 (78%)
Frame = +1
Query: 274 LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLK 453
LTS++ +A+P ++ +MLGE+L+PL++R P K+TGMLLE+D +E+LH++E E+LK
Sbjct: 575 LTSSLASASPA-DRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALK 633
Query: 454 AKVDEAVAVLQ 486
+KV EA+ VL+
Sbjct: 634 SKVSEALDVLR 644
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 75.4 bits (177), Expect = 4e-14
Identities = 36/72 (50%), Positives = 55/72 (76%)
Frame = +1
Query: 274 LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLK 453
L S + A P ++Q+ MLGE L+PL++++ + A K+TGMLLE+D +E+LH+LE E+LK
Sbjct: 357 LASNLSNATP-EQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALK 415
Query: 454 AKVDEAVAVLQA 489
AKV EA+ VL++
Sbjct: 416 AKVAEAMDVLRS 427
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 74.9 bits (176), Expect = 5e-14
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = +1
Query: 280 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 459
+T LA A +Q+ +LGE L+PL+ ++ + A K+TGMLLE+D +E+LH+LE E+L AK
Sbjct: 563 ATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAK 622
Query: 460 VDEAVAVLQ-AHQAKQQELKKNK 525
V EA+ VL+ +Q Q + NK
Sbjct: 623 VSEALDVLRNVNQPSSQGSEGNK 645
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 74.1 bits (174), Expect = 8e-14
Identities = 35/71 (49%), Positives = 52/71 (73%)
Frame = +1
Query: 274 LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLK 453
L S + A+P + +MLG+ L+PL+++ P A K+TGMLLE+D +E+LH+LE E+LK
Sbjct: 578 LASDLALASP-DKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALK 636
Query: 454 AKVDEAVAVLQ 486
AKV EA+ VL+
Sbjct: 637 AKVSEALDVLR 647
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 68.5 bits (160), Expect = 4e-12
Identities = 32/59 (54%), Positives = 44/59 (74%)
Frame = +1
Query: 313 QKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVLQA 489
+ Q+LGE L PL++++ P LA KITGMLLE+D SELL +L+ E L +VDEA VL++
Sbjct: 525 EMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKS 583
>At3g19350.1 68416.m02455 polyadenylate-binding protein-related /
PABP-related similar to poly(A)-binding protein [Cucumis
sativus] GI:7528270; contains Pfam profile PF00658:
Poly-adenylate binding protein, unique domain
Length = 103
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/73 (43%), Positives = 49/73 (67%)
Frame = +1
Query: 289 LAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDE 468
LA+ P +EQ+ ++GE LF +++ + P A KITGM+LE+D ++LH+L ++ K V E
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKE 82
Query: 469 AVAVLQAHQAKQQ 507
A+ VL AH QQ
Sbjct: 83 AMEVL-AHSFLQQ 94
>At1g30050.1 68414.m03674 hypothetical protein
Length = 389
Score = 32.3 bits (70), Expect = 0.33
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRAPAQ-STIRTSLDARPITGQQGVAAAAASIRTPLV 178
P + + AS A+ P+ P+P +PA S + S D PI QQ + ++ +P
Sbjct: 305 PSITRTLSMASYSASELPSISPSPSSPASPSRLSVSTDIYPILVQQS-STNDITVESP-- 361
Query: 179 SQSSRPANYKYTPNMRNPPAPQPA 250
+ RP + YT + + P + P+
Sbjct: 362 -KPVRPPSLGYTDDGKRPSSQLPS 384
>At1g06760.1 68414.m00718 histone H1, putative similar to histone
H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana];
identical to cDNA H1-1C mRNA for histone H1-1 (partial)
GI:732560
Length = 274
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 8 VRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARP-ITGQQGVAAAAASIRTP 172
V+P T AA + +P PRA A +T R ++DA+P + AA A + +P
Sbjct: 176 VKPKTAAAKK-VTAKAKAKPVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSP 230
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 229 PTSSTTSSAIQGQEPLTSTMLAAAPLQEQKQMLG 330
P SST S+++ Q+ TST + AP QEQ ++G
Sbjct: 257 PKSSTPSNSMSEQQHWTSTKASNAPKQEQDNIVG 290
>At3g28930.1 68416.m03613 avrRpt2-induced AIG2 protein (AIG2)
identical to SP|P54121 AIG2 protein (avrRpt2-induced
gene) {Arabidopsis thaliana}
Length = 170
Score = 31.5 bits (68), Expect = 0.57
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Frame = +1
Query: 265 QEP-LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLA----GKITGMLLE-IDNSEL-- 420
QEP + + +L AP+ Q+ G L+ L R+HP ++ G I G +L + +S+L
Sbjct: 19 QEPAVVNLILECAPVMVSAQLHGYHLYRLKGRLHPCISPSDNGLINGKILTGLTDSQLES 78
Query: 421 LHMLEHAESLKAKVDEAVAVLQAHQAKQQE 510
L M+E E ++ V+ V + + KQ E
Sbjct: 79 LDMIEGTEYVRKTVE--VVLTDTLEKKQVE 106
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 366 RVHSLNKWKQSFPKHLFLFLEWCC 295
+ S NK++ SFP+H+FL CC
Sbjct: 58 KFRSTNKFRSSFPQHIFLESPICC 81
>At5g40560.1 68418.m04922 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 410
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 384 YFPSQIRVHSLNKWKQSFPKHLFLFLEWCCCKHSR 280
Y ++V+S+NK K KHL +E CC K R
Sbjct: 325 YMYKHLKVNSVNKVKVENLKHLCELIEKCCTKDLR 359
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +2
Query: 11 RPSTQAASAYANMQPT---YRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVS 181
RPST ++ A+ T RP + + R SL +RP T +A+S P +
Sbjct: 205 RPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRPSTPTSRPQLSASS---PNII 261
Query: 182 QSSRPANYKYTPNMRNP 232
+SRP + TP R+P
Sbjct: 262 -ASRPNSRPSTPTRRSP 277
>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
responsive-to-antagonist 1, putative /
copper-transporting ATPase, putative similar to ATP
dependent copper transporter SP|Q9S7J8 [Arabidopsis
thaliana]
Length = 995
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 385 TGMLLEIDNSELLHMLEHAESLKAKVDEAVAVLQAHQAK 501
TG+L+ I NSEL+ +L ++ LK EA+++L++ K
Sbjct: 777 TGILVSI-NSELIGVLSVSDPLKPSAREAISILKSMNIK 814
>At4g01450.3 68417.m00186 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 245
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 323 ICFCSWSGAAASIVEVRGSCPWIALLVVELVGCACLVYIY 204
+ F SW A I V+ CP+ + +++ + G C Y+Y
Sbjct: 189 VLFSSWMLIQAKI-NVKYPCPYSSTVILSVFGSGCTRYVY 227
>At1g07310.1 68414.m00778 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 352
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 62 RPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVSQSSRPANYKYTPNMRNPPAP 241
RP+ R + ++ ++ RPI Q S PL S+ N+ Y+P+ PP P
Sbjct: 120 RPSGRPQGKIRLKLAIKDRPIPPPQHPPPRPQS--QPLDYYSAPQGNHYYSPSPPPPPPP 177
Query: 242 QPAV 253
Q +
Sbjct: 178 QAPI 181
>At2g36830.1 68415.m04516 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 251
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 350 ISGNSRSPSICFCSWSGAAASIVEVRGSCPWIALLVVELVGCACLVY 210
ISG +P++ F ++ G +I +RG WIA L+ +V C L +
Sbjct: 79 ISGGHVNPAVTFGAFIGG--NITLLRGILYWIAQLLGSVVACLILKF 123
>At2g11090.1 68415.m01187 expressed protein
Length = 151
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 240 HNQQCYPRTRTSDLYYACSSTTPGTETDAWGTTVSTYS 353
H Q PR R DL + +TP + T W TT S YS
Sbjct: 16 HQQTTRPRGRVEDLSTSRHHSTPWSST-TWTTTRSHYS 52
>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
protein identical to gi|4775268|emb|CAB42531
Length = 150
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/82 (28%), Positives = 33/82 (40%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVS 181
P PS AA A T AP AP ++ + + + AA + S
Sbjct: 28 PKKSPSPTAAPTKAPTATT--KAPSAPTKAPAAAPKSSSASSPKASSPAAEGPVPEDDYS 85
Query: 182 QSSRPANYKYTPNMRNPPAPQP 247
SS P++ P + +PPAP P
Sbjct: 86 ASS-PSDSAEAPTVSSPPAPTP 106
>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
protein
Length = 660
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/90 (25%), Positives = 33/90 (36%)
Frame = +2
Query: 5 PVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVSQ 184
P RPS AA A P P S I T Q A + P V+
Sbjct: 347 PPRPSVTAAEATPPNLSAPLPHCNTPQPSPISQQAAVESNTQMQSTA-----LPRPSVTA 401
Query: 185 SSRPANYKYTPNMRNPPAPQPAVLSKDKNL 274
+RP + ++ + P PQ A+ + N+
Sbjct: 402 EARPLHQPHSNTSQPRPIPQQALAQSNTNI 431
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Frame = +2
Query: 11 RPSTQAASAYANMQPTYRP------APRAPAQSTIRTSLDARPITGQQGVAAAAASIRTP 172
+PS A S ++ PT P +P APA + ++ ++ Q +++ TP
Sbjct: 133 QPSAPAHSPVPSVSPTQPPKSHSPVSPVAPASAPSKSQPPRSSVSPAQPPKSSSPISHTP 192
Query: 173 LVSQSSRPANYKYTPNMRNPPAPQP 247
+S S ++ TP+ +P +P P
Sbjct: 193 ALSPSHATSHSPATPS-PSPKSPSP 216
>At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger)
family protein ow similarity to RING-H2 finger protein
RHA3b [gi:3790575], RHA1a [gi:3790554]; contains Pfam
domain zinc finger, C3HC4 type (RING finger) PF00097
Length = 208
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 284 LCLQQH-HSRNRNRCLGNDCFHLFRE-CTLIWLGK*LVC 394
+CL+ S + N L DCFHLF + C WL + C
Sbjct: 155 ICLEDFSESHDDNIILLPDCFHLFHQSCIFEWLKRQRSC 193
>At5g37250.1 68418.m04475 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA3b [gi:3790575], RHA3a [gi:3790573]; contains Pfam
domain zinc finger, C3HC4 type (RING finger) PF00097
Length = 192
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 284 LCLQQH-HSRNRNRCLGNDCFHLFRE-CTLIWLGK*LVC 394
+CL+ S + N L DCFHLF + C WL + C
Sbjct: 139 ICLEDFSESHDDNIILLPDCFHLFHQNCIFEWLKRQRSC 177
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRAP-AQSTIRTSLDARPITGQQGVAAAAAS---IRT 169
PP P + + + ++ T PAP AP + STI S + P+T G A +S +
Sbjct: 217 PPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTIPPS--SAPMTSPPGSMAPKSSSPVSNS 274
Query: 170 PLVSQSSRP 196
P VS S P
Sbjct: 275 PTVSPSLAP 283
>At2g31090.1 68415.m03797 expressed protein
Length = 75
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 67 WSVSGLHICICRCCLC 20
W V L CIC CCLC
Sbjct: 32 WIVGLLLSCICPCCLC 47
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/82 (20%), Positives = 30/82 (36%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVS 181
PPV+P P +P P P T + P+ + + ++ P +
Sbjct: 451 PPVKPPPVHKPPTPTYSPPIKPPPVKPPTPTYSPPVQPPPVQ-KPPTPTYSPPVKPPPIQ 509
Query: 182 QSSRPANYKYTPNMRNPPAPQP 247
+ P Y+P ++ PP P
Sbjct: 510 KPPTPT---YSPPIKPPPVKPP 528
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/82 (21%), Positives = 31/82 (37%)
Frame = +2
Query: 2 PPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVS 181
PPV+P P +P P P T + P+ + + I+ P +
Sbjct: 501 PPVKPPPIQKPPTPTYSPPIKPPPVKPPTPTYSPPIKPPPV-HKPPTPTYSPPIKPPPIH 559
Query: 182 QSSRPANYKYTPNMRNPPAPQP 247
+ P Y+P ++ PP +P
Sbjct: 560 KPPTPT---YSPPIKPPPVHKP 578
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 158 SIRTPLVSQSSRPA--NYKYTPNMRNPPAPQPAVLSKD 265
+I P++ S PA + P +NPPAP PA SK+
Sbjct: 37 TIDAPVMGAHSWPALADAAQQPRPKNPPAPAPAPPSKN 74
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 59 YRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVSQSSRPANYKYTPN 220
++P P P T+R L A + G ++ AS L+S+ P+ +Y P+
Sbjct: 1394 FQPPPERPPSGTVRYQLAANNLQGGSTISGNIAS--QMLLSRPDVPSAAQYRPS 1445
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 137 GVAAAAASIRTPLVSQSSRPANYKYTPNMRNPPAPQPAVLSKDKNL*PLLCLQQHHSR 310
G+ A S ++ L++ S Y +TP+M P P P+ ++ + P + ++H +R
Sbjct: 253 GITGLAFSDQSELLASYSDEFIYLFTPDMGLGPTPYPSSTKTEERMTPQV-YKEHTNR 309
>At3g51960.2 68416.m05700 bZIP family transcription factor contains
Pfam profile: PF00170 bZIP transcription factor
Length = 228
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 303 WCCCKHSRG-QRFLSLDSTAGCGAGGLRMFG 214
+CCCK RG QR + DS G G L FG
Sbjct: 2 FCCCKDCRGNQRVSNFDSLTGVFFGDLE-FG 31
>At3g51960.1 68416.m05699 bZIP family transcription factor contains
Pfam profile: PF00170 bZIP transcription factor
Length = 227
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 303 WCCCKHSRG-QRFLSLDSTAGCGAGGLRMFG 214
+CCCK RG QR + DS G G L FG
Sbjct: 2 FCCCKDCRGNQRVSNFDSLTGVFFGDLE-FG 31
>At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family
protein sequencing discrepancy between cDNA and genomic
sequence prevents representation of entire coding
sequence
Length = 578
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +1
Query: 295 AAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAV 474
A PLQ+ Q+L + + P+I + P + +T L I + + +E K K E
Sbjct: 385 ATPLQQVAQVLKQSISPVISTVPPTM---LTATSLSIPSDNASNEMERRPPRKRKFQELP 441
Query: 475 AVLQAHQAKQQE 510
A + + +Q+
Sbjct: 442 ADCKVPEKDKQQ 453
>At2g03070.1 68415.m00260 expressed protein
Length = 524
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 80 PAQSTIRTSLDARPITGQQGVAAAAASIRTPLVSQSSRPANYKYTP---NMRNPPAPQ 244
P QS + ++G Q V +AAS P ++ P Y +P M N P+PQ
Sbjct: 238 PGQSNNINNQGMMQVSGTQFVGRSAASPSGPNFDNTTSPLPYSNSPRATGMVNVPSPQ 295
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 27.5 bits (58), Expect = 9.3
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +2
Query: 14 PSTQAASAYANMQPTYRPAPRAPAQSTIRTSLDARPITGQQGVAAAAASIRTPLVSQSSR 193
P +Q A +N P +P P + S + S ARP Q AA+ S +S+
Sbjct: 466 PVSQPQPA-SNPFPVSQPRPNSQPFSMSQPSSTARPFPASQ-PPAASKSFPISQPPTTSK 523
Query: 194 PANYKYTPNMRNP-PAPQPAVLSK 262
P PN P P QP SK
Sbjct: 524 PF-VSQPPNTSKPMPVSQPPTTSK 546
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,508,675
Number of Sequences: 28952
Number of extensions: 261513
Number of successful extensions: 1040
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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