Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30648
         (640 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2BWU9 Cluster: Conserved membrane protein, multidrug e...    35   1.9  
UniRef50_Q9XGZ2 Cluster: T1N24.22 protein; n=3; core eudicotyled...    33   5.8  

>UniRef50_A2BWU9 Cluster: Conserved membrane protein, multidrug
           efflux associated; n=5; Prochlorococcus marinus|Rep:
           Conserved membrane protein, multidrug efflux associated
           - Prochlorococcus marinus (strain MIT 9515)
          Length = 277

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 21/59 (35%), Positives = 34/59 (57%)
 Frame = -1

Query: 511 LFCDVKILYSLWFKMASHLVAFKINVYSSTKEPKRMA*DVCRFI*NVYNSTLLCFLYIF 335
           LFC + ILYSLWF +++  + F +  +++T E  R    + RF  N ++ +L  F  IF
Sbjct: 168 LFCSIGILYSLWFLISTTTIWF-VKTWNAT-EVLRSFLYIGRFPLNSFSFSLRIFFSIF 224


>UniRef50_Q9XGZ2 Cluster: T1N24.22 protein; n=3; core
           eudicotyledons|Rep: T1N24.22 protein - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 1005

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 28  CGKILVLRCWKYNFT-RFYSRIYFKTSTYSFQISSFDQFSEMLPSNV 165
           CG +L ++    +F+ +F SRI+  +S YS Q+S+ + F+  LP NV
Sbjct: 401 CGTLLTVQLQNNDFSGKFPSRIWNASSMYSLQVSN-NSFTGELPENV 446


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,811,868
Number of Sequences: 1657284
Number of extensions: 11111270
Number of successful extensions: 20966
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20964
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)