Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30648
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.06c |swi1||replication fork protection complex subunit S...    26   4.0  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   5.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.0  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.2  

>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
 Frame = +1

Query: 34  KILVLRCWKYNFTRFYSR------IYFKTSTYSFQISSFDQFSEMLPSNVMFVVFIMK*W 195
           ++L ++ +   F RF S+      IY    ++    S FDQ + ++ + +M   F MK W
Sbjct: 370 QLLYVQSFFLEFMRFSSKPKKTEEIYSNDYSFGLAASVFDQRALIMHNRLMVESFEMKQW 429

Query: 196 SNY 204
           S +
Sbjct: 430 STF 432


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 305 MSELIIGPWHA-EHISPNLILCSLI 234
           ++  I GPWHA ++I PN +L  ++
Sbjct: 168 LAYFIYGPWHANDYIKPNHLLFLIV 192


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 636 FFIYTHFVVLVLFVFNIGHLIDVIILY 556
           FF +    V + F+F++ HL+ + IL+
Sbjct: 157 FFFFLCVCVFLSFLFSLSHLLSLAILF 183


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 167  ITFEGNISEN*SNELIWNEYVLVLKYILE 81
            +TFEG  S+N  N+L +N+Y+  +  I E
Sbjct: 2237 VTFEGRFSQNEQNDL-FNKYLSFIADIYE 2264


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -1

Query: 535 LRKFLAIFLFCDVKILYSLWFKMASHLVAFKINVYSSTKEPKRMA*DVCRFI 380
           + KFL+++ F D    ++  F +  HL+   IN    T E    A D+  F+
Sbjct: 621 MHKFLSVYSFMDYHSCHAASFIILVHLL---INPSEQTIEQLNTAIDILNFV 669


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,993
Number of Sequences: 5004
Number of extensions: 54026
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)