Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30648
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0033 - 6235806-6235867,6236059-6236284                           30   1.3  
04_04_0266 - 24043482-24043778,24043974-24044074,24044154-240443...    28   7.2  
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979...    28   7.2  
08_02_0806 + 21403911-21404203,21406377-21406507,21406851-214069...    27   9.5  
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939...    27   9.5  

>02_02_0033 - 6235806-6235867,6236059-6236284
          Length = 95

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 10  PTKSKFCGKILVLRCWKYNFTRFYSRIYFKTSTYSFQISSFD 135
           PTKS  C +ILV R  K+N+   + + Y   +TY F I +F+
Sbjct: 54  PTKSTRCRRILVPRLVKHNWDPGHCKHY---ATYPFMIRAFN 92


>04_04_0266 -
           24043482-24043778,24043974-24044074,24044154-24044371,
           24044464-24044598,24044695-24044762,24044850-24044991,
           24045063-24045473,24045558-24045665,24046223-24046314,
           24046462-24046510,24046596-24047024,24047114-24047295
          Length = 743

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 116 NEYVLVLKYILE*KRVKLYFQHLKTRIFPQNLDLVGW 6
           N + L+ + I    ++K  F H++ +  P NLD  GW
Sbjct: 194 NPFKLMKESIKMLSKIKGTFSHIEDKEIPANLDWFGW 230


>04_03_0809 +
           19896801-19897170,19897265-19897513,19897850-19897900,
           19898007-19898267,19898427-19898479,19898746-19898887,
           19898972-19899226,19899616-19900640
          Length = 801

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 636 FFIYTHFVVLVLFVFNIGHLIDVIILYCV 550
           F + TH + +V+ +    HL+ +++ YCV
Sbjct: 468 FMVTTHLMTVVMLLIWKKHLVFILLFYCV 496


>08_02_0806 +
           21403911-21404203,21406377-21406507,21406851-21406963,
           21407478-21407594,21407611-21407803,21407890-21408105,
           21408272-21408909
          Length = 566

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
 Frame = +1

Query: 214 QMNLKGNISEHNIKFG------EICSACQGPIISSDILN 312
           QM++K    EHN+KF       ++ S+ Q PIIS + LN
Sbjct: 244 QMDIKKMEDEHNLKFRGFREVIDLLSSSQKPIISYNFLN 282


>01_06_1818 -
           40093327-40093384,40093501-40093580,40093661-40093946,
           40095007-40095291,40095386-40095513,40095625-40096560,
           40096650-40096712,40096801-40096854,40096963-40097139,
           40097452-40097583,40097666-40097785,40097935-40098627,
           40098760-40099158,40099263-40099271
          Length = 1139

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 312 IQNVRTYNWALACRTYFTK 256
           ++N++ Y+W   CRTY T+
Sbjct: 587 LRNIQLYSWPEHCRTYLTR 605


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,784,780
Number of Sequences: 37544
Number of extensions: 267166
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)