Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30648
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81487-4|CAB03998.2|  420|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81487-4|CAB03998.2|  420|Caenorhabditis elegans Hypothetical
           protein C54E10.5 protein.
          Length = 420

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 238 SEHNIKFG-EICSACQGPIISSDILNRDYCCLEK 336
           + H + FG E C AC      + +LNR Y C++K
Sbjct: 23  TSHGLHFGLETCRACAAFFRRTVVLNRKYKCIQK 56


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/79 (22%), Positives = 40/79 (50%)
 Frame = +1

Query: 109 YSFQISSFDQFSEMLPSNVMFVVFIMK*WSNY*IRQMNLKGNISEHNIKFGEICSACQGP 288
           +++ ++  D+F  +L S+  F  F +  +S   I++  +       NI F  +C +    
Sbjct: 495 HTYCVTLHDKFRGILKSDFFFYKFDLISFSKSRIKKFRV-------NIFFQSVCHSVNSS 547

Query: 289 IISSDILNRDYCCLEKICT 345
           +++S ++ R + CL+  CT
Sbjct: 548 LLNSAVVGRGWRCLD--CT 564


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/79 (22%), Positives = 40/79 (50%)
 Frame = +1

Query: 109 YSFQISSFDQFSEMLPSNVMFVVFIMK*WSNY*IRQMNLKGNISEHNIKFGEICSACQGP 288
           +++ ++  D+F  +L S+  F  F +  +S   I++  +       NI F  +C +    
Sbjct: 495 HTYCVTLHDKFRGILKSDFFFYKFDLISFSKSRIKKFRV-------NIFFQSVCHSVNSS 547

Query: 289 IISSDILNRDYCCLEKICT 345
           +++S ++ R + CL+  CT
Sbjct: 548 LLNSAVVGRGWRCLD--CT 564


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,222,833
Number of Sequences: 27780
Number of extensions: 292193
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)