Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30648
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.6  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 305 MSELIIGPWHAEH 267
           +S+L IG W++EH
Sbjct: 325 LSDLAIGCWNSEH 337


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = +1

Query: 55  WKYNFTRFYSRIYFK 99
           +KYN+  +  ++Y+K
Sbjct: 329 YKYNYNNYNKKLYYK 343


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -2

Query: 627  YTHFVVLVLFVFNIGHLIDVIILYC 553
            YT++ + VL    +G  +   + YC
Sbjct: 1183 YTNYTIQVLAFTRVGDGVPTTVTYC 1207


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -2

Query: 627  YTHFVVLVLFVFNIGHLIDVIILYC 553
            YT++ + VL    +G  +   + YC
Sbjct: 1179 YTNYTIQVLAFTRVGDGVPTTVTYC 1203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,847
Number of Sequences: 438
Number of extensions: 3561
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)